Canis lupus familiaris (dog): 488092
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Entry
488092 CDS
T01007
Symbol
SOX2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa04390
Hippo signaling pathway
cfa04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
488092 (SOX2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
488092 (SOX2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cfa03000
]
488092 (SOX2)
Transcription factors [BR:
cfa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
488092 (SOX2)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
488092
NCBI-ProteinID:
XP_005639809
VGNC:
46678
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Position
34:18934171..18936303
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AA seq
323 aa
AA seq
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MYNMMETELKPPGPQQTSGGGGGGGGGGGNSTAAAAGGNQKNSPDRVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRR
KTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMM
QDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPG
MALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHM
SQHYQSGPVPGTAINGTLPLSHM
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcggcggcggcggcaactccaccgcggcggcggcgggcggcaaccag
aagaacagcccggaccgcgtcaagcggcccatgaacgccttcatggtgtggtcccgcggg
cagcggcgcaagatggcccaggagaaccccaagatgcacaactcggagatcagcaagcgc
ctgggcgccgagtggaaacttttgtcggagacggagaagcggccgttcatcgacgaggcc
aagcggctgcgagcgctgcacatgaaggagcacccggattataaataccggccccggcgg
aaaaccaagacgctcatgaagaaggataagtacacgctgcccggcgggctgctggccccg
ggcggcaacagcatggccagcggggtcggggtgggcgccggcctgggcgcgggcgtgaac
cagcgcatggacagctacgcgcacatgaacggctggagcaacggcagctacagcatgatg
caggaccagctgggctacccgcagcacccgggcctcaacgcgcacggcgccgcgcagatg
cagcccatgcaccgctacgacgtgagcgccctgcagtacaactccatgaccagctcgcag
acctacatgaacggctcgcccacctacagcatgtcctactcgcagcagggcacccctggc
atggcgctgggctccatgggctcggtggtcaagtccgaggccagctccagcccccccgtg
gttacctcctcctcccactccagggcgccctgccaggccggggacctccgggacatgatc
agcatgtacctccccggcgccgaggtgccggagcccgccgcccccagcagactgcacatg
tcccagcactaccagagcggcccggtgcccggcacggccattaacggcacactgcccctc
tcgcacatgtga
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