Canis lupus familiaris (dog): 607950
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Entry
607950 CDS
T01007
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
607950 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfa03019
]
607950 (MTREX)
03041 Spliceosome [BR:
cfa03041
]
607950 (MTREX)
03009 Ribosome biogenesis [BR:
cfa03009
]
607950 (MTREX)
03016 Transfer RNA biogenesis [BR:
cfa03016
]
607950 (MTREX)
Enzymes [BR:
cfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
607950 (MTREX)
Messenger RNA biogenesis [BR:
cfa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
607950 (MTREX)
Spliceosome [BR:
cfa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
607950 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
607950 (MTREX)
Ribosome biogenesis [BR:
cfa03009
]
Eukaryotic type
Pre-60S particles
Helicases
607950 (MTREX)
Transfer RNA biogenesis [BR:
cfa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
607950 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
607950
NCBI-ProteinID:
XP_849676
Ensembl:
ENSCAFG00000006818
VGNC:
46201
UniProt:
A0A8C0RUP3
LinkDB
All DBs
Position
2:39706168..39808488
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTASGTKKDKEKDKGKWKGPPGSAEKGGKRFDGKLQSESTNIG
KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLN
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgaactcttcagcgtgttcgaggacgactcgaccaccgcg
tccggaactaaaaaagacaaggagaaagacaaggggaaatggaaggggccgccgggatct
gcggaaaagggcgggaaacgttttgatggtaaattgcagtctgagtcgactaatattgga
aaaaccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagcct
agggtggaagaatcaataactgaagatttaagtttggcagacttgatgcccagagtcaag
gtacagtccgttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattagccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaagatgttggtttgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttaagaagtatgctgtacagaggttct
gaagttatgcgagaagtagcatgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattctgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcatgtaatttacacagattaccggcctactccattgcagcactacatt
tttccagcagggggagatggcctgcaccttgttgttgatgaaaatggtgacttcagagaa
gataattttaatactgcgatgcaagtacttcgagatgcaggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattattttcagttttagtaagaaggattgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtctactt
cctattttgaaagaaactatagaaattctattttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaactgttttatttacaaat
gcccggaaatttgatgggaaagatttcagatggatttcctctggtgaatacattcagatg
tctggtcgggctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacaattggaaaacagctacttaagggctcagctgatcctctaaat
agtgcttttcatttgacctacaacatggttttgaatttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcagcattatagagcaattccagga
gtagtagagaaagtaaagaactcagaagaacaatataataaaatagtaataccaaatgag
gaaagcgtcgtcatctattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatatgttcacaaaccaaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtgaatttctcaaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagttgaagtacttctg
cgctgcagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgaaaaaggagagatgcaggttgttccagtgttggtgcacctcctgtctgctatcagc
agtgttaggctttacattcctaaagacctccggccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaggatcaaggactgaaaaaagtcatccagaaagtagaggctttt
gagcatagaatgtattctcatccacttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaaaaaagcacagattgcaatagatattaaatctgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaagaagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgaactccttttaactgagatgatgtttaatggccttttcaatgacctg
tctgcagaacaggcaacggcactcctgagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcggcagaagccaaactggagattgatgaggaaacttacctaaac
tcattcaaacctcacttaatggatgtagtatatacctgggcaacaggcgctacatttgcc
catatctgcaaaatgacagatgtcttcgaaggcagcataattcgttgtatgaggcgccta
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctc
tacttataa
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