Canis lupus familiaris (dog): 608527
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Entry
608527 CDS
T01007
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
cfa
Canis lupus familiaris (dog)
Pathway
cfa03440
Homologous recombination
cfa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
608527 (PALB2)
03460 Fanconi anemia pathway
608527 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfa03400
]
608527 (PALB2)
DNA repair and recombination proteins [BR:
cfa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
608527 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
608527 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
608527
NCBI-ProteinID:
XP_850671
Ensembl:
ENSCAFG00000030772
VGNC:
44245
UniProt:
A0A5S9I5Z8
A0A8P0SS42
LinkDB
All DBs
Position
6:23776491..23804551
Genome browser
AA seq
1195 aa
AA seq
DB search
MEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKFKNSIKKTAEEHDCLLQ
QDTLPQLNHSESKNKVSPCDTLQISTHLDEETGEKTPVTFDIEPESFNPEHGSVEELHIQ
RTGDIQEHFPYWVGGPGVEKRQSKLPGRRKKQQKRTFTSQARDSLFDTDSLILSGKRLKE
QEENNGENPRTPITKRTYLSSSMSDIPGSPSPVMETNVRGILIPPTAKPQRDVDALVRGN
NFPMVPTLASFTLSNSSSSHHLEHKPPKDDWELITHSLKNINPASPVNLEAQVKKITVSK
DNPGISASGQLPQSPDLEPDNSCSPDKLIYDNLSADGNQNLKGQNHTEESLKFPHNTLDG
RNESLQENEVLSQSKSLSPEVISPASTENQTYSCTVLEGLLFPAEYYVRTTRRMSNCQRK
VALEAVIQSHLGVRKKEFKNKSKDATKNLNLCSEETDQSEIRTSDTCTKQSSSRRSQKHL
SLTEVHSPTGPTEDNLPRKAVTQPSGGRHRRKRKSICPPVLDHHELLLPTPSTSGVNRSK
KEITLHKDQNEKVIIQGKKDHCQKEDSLSSRKNGYLALDSAVFKASFHENEMLSLKQLSS
FLKTTDFQLPDEIFGPLKLEKLKSYSEKTVEPIVSKMYAQKHLKEGNCIVLEELTPTQID
TEMKDLEEEILVLPEKAQPKMPSLTSRSQKKGLSSSILLFTPLNTSAPENSNRPTADMCS
PTFPILGTTPAFGSQALSEKVCTETVRPTCSTPQLPHLKDSDHVLASAAHTLKDSDQKQL
DNWTNLSKPGGTLVVSGRDGQPSCDCDSGPQATPLPTESVPFKDNQLCGNPQPESWKQST
EQEQSASLTEVAELPACQSSNPGHLQLVSKLKNPSGSCSVDVSAMWWEIAGFKEPCIITA
CEYVVSLWKPLNTLQWEKLYSWHFTEVPVLQIVPVPDVCNLVCVALGNLEIREIRSLLCS
SDGKREKQVLLSSGNIKAVLGLTGRRLVSSSGTLCDQQVEIMTFAEDGRSKEKQFLMPPE
ETVLTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIGDRYQASVCRKAYSEMGLL
FVVLSHPCAKESELLGSPVFQLIVINPKTTLSVGVMLYCLPQGQAGRFLEGDVKDHFAAA
VLTSGTIAIWDLLLGHCTALLPPISDQHWSFVKWSGTDSHLLAGQKDGNIFVYRY
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcctcctgggaagcccctcagctgtgaggagaaggaaaagttgaaggaaaaa
ttagcattcttgaaaagggaatacagcaagacactggcccgccttcagcgtgctcaaaga
gctgagaagtttaagaattctattaagaaaacagcggaagaacatgattgcttgcttcag
caggatactttaccacagctaaaccactcagaatctaaaaataaagtatctccttgtgac
acattgcaaattagcactcatctggatgaagaaactggagaaaagacacctgtcacattt
gacattgagcctgagtccttcaaccctgaacatggctctgtggaagaattacatatacaa
agaacaggtgatatccaagaacattttccctactgggtcggtggccctggtgttgagaaa
aggcagagtaagctgccagggagaagaaaaaagcagcagaaaagaacatttacttcacag
gcaagagactctttgtttgacacagattcactcatactgtctggaaaaagactaaaggaa
caggaagaaaacaatggagaaaatcctaggacacctataactaaaagaacttacctttca
agttctatgtctgacattcctggttctccatcaccagtgatggaaactaatgtaaggggt
atattaattccaccaactgccaaaccacaaagagatgttgatgcactcgtaagaggaaat
aatttccccatggtgcctacacttgcttcatttactctatcgaatagcagtagcagtcat
caccttgaacataagcctcctaaagatgactgggaacttattactcacagtttaaaaaac
attaaccctgcttcacctgtaaacctagaggcacaagtgaaaaaaattacggtctctaaa
gataacccaggtataagtgcaagtggccagctgcctcaaagtcctgacttagagccagat
aattcatgctctccagataaactcatttatgataacttatcagcagatggaaaccaaaac
ttaaaaggacagaatcacacagaagagtctttaaaatttccccataacactcttgatggt
agaaatgaaagtcttcaggaaaatgaggttttaagtcaatctaagagtcttagcccagaa
gtaatctctcctgcttctacagaaaatcaaacatattcttgcacagtgcttgaaggcctt
ctatttcccgcagaatattatgttagaacaacacggcgcatgtcaaattgtcagaggaag
gtagccctggaggctgtaattcaaagtcatttgggtgtcagaaagaaagagtttaaaaat
aaaagtaaagacgcaactaaaaatttaaacctttgcagtgaagagactgaccagagtgaa
attaggacttctgacacatgcacaaaacaatcaagttcaagaagatctcaaaaacatctg
tccttaactgaagtccactctcccactgggccaactgaagataaccttcccaggaaagca
gttacccagccatctggtggaagacacagaagaaaaagaaagtcaatctgcccacctgta
ttagatcatcatgaactacttttgccaactcctagcacatcaggtgttaatagatccaag
aaagaaatcaccttacacaaagatcagaatgaaaaagtaattattcaggggaagaaagat
cactgtcaaaaagaagactccctttcttccagaaagaatggttatctagctttggattct
gctgtgttcaaggcttcatttcatgagaatgagatgctaagtttaaagcaactgtcatct
tttctcaaaaccacagactttcagttacctgatgaaatctttggacctcttaagcttgaa
aaactgaagtcctattcagaaaaaacagttgagcctattgtatcgaaaatgtatgcacag
aagcatcttaaggagggaaactgtattgttttggaagaattgactcctacacaaattgat
actgaaatgaaggacttggaagaggaaattctggttctcccagaaaaagcacaacctaaa
atgccaagcctaacaagccggtctcagaagaagggtctttcttcatccatattacttttc
actcctttaaataccagtgcccccgagaacagtaacaggccgacagcagacatgtgttcg
cccactttccccatcttaggcacaactccagcttttggctcccaagcactcagtgaaaaa
gtgtgcacagagactgtcagaccaacttgctctacaccccaacttcctcacttaaaagac
agtgatcatgtgctcgcttcggcagcacatacactaaaagacagtgatcagaaacaactc
gacaattggaccaacttgtcaaaaccaggtggcaccctggttgtgtcaggtcgagatgga
cagccttcctgtgactgtgattctggtccccaggcaacacctcttcccactgagtcggtc
cctttcaaagacaaccagctgtgtggaaatccccagccggagtcatggaaacagtccact
gaacaggaacaatctgcttccctgactgaagtagcagagcttcctgcttgtcaaagctca
aacccaggccacctccaattggtttcaaagttaaagaatccttctggttcctgttcagtg
gatgtgagtgccatgtggtgggaaatagcgggtttcaaagagccatgtatcataactgcc
tgtgaatatgtagtttctctttggaaacctctcaatactttgcagtgggaaaaactttat
tcctggcactttacagaggttccagtattacagatagttccagtgcccgatgtttgtaat
ctcgtgtgtgtggctttgggaaatttggagatcagagaaatcaggtcattactttgctcc
tctgatggtaaacgtgaaaagcaagtactactgagttctggaaatataaaagctgtgctt
ggcctgacagggaggaggctagtcagtagcagtgggaccctttgtgaccaacaagtagaa
atcatgacttttgcagaagatggaagaagcaaagaaaaacaatttttgatgccccctgaa
gagactgtattaacttttgccgaggtccaagggatgcaggaagctctgcttggtactact
ataatgaacaacattgttatttggaatttaaagactggtcagctcctgaaaaagatgcac
attggtgatcgctaccaagcttcagtttgtcgcaaagcctattctgaaatggggctcctg
tttgttgttctgagtcatccttgtgccaaagagagtgagctgttgggaagccctgtgttt
cagctgatcgtgattaaccctaagacaactctgagtgtgggggtgatgctgtactgtctt
cctcaagggcaggctggaaggttcctggagggggacgtgaaagatcattttgcagccgca
gtgttgacttctggaacaattgccatttgggacctacttctgggtcattgtaccgctctc
ctcccacctatctctgaccagcattggtcctttgttaaatggtcaggtacagattctcat
ttgctggctggacaaaaagatggaaatatatttgtataccgctactga
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integrated database retrieval system
