Corynebacterium faecale: CFAEC_04275
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Entry
CFAEC_04275 CDS
T09289
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfac
Corynebacterium faecale
Pathway
cfac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFAEC_04275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfac03400
]
CFAEC_04275 (mfd)
Enzymes [BR:
cfac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFAEC_04275 (mfd)
DNA repair and recombination proteins [BR:
cfac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFAEC_04275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
DUF3638
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WJY91702
LinkDB
All DBs
Position
915176..918829
Genome browser
AA seq
1217 aa
AA seq
DB search
MTPMLSGLLKIAATDPKLKGMISNVGESNLHLTGVDQARPWVIGALAHHAPVLVVTATGR
EAEDLTAELRAMMGDKVAWFPSWETLPHERLSPGVDIVGRRAQVLNKLDDAKIVVTAARA
FCQPVLQEAEGRAPLVLSEGSEFDFSSLSAELVFRAYKNVDMVAKRGEFATRGGILDVFP
TTLDYPVRVEFWGDEVSDIRQFSVADQRTIPEMALDHIEIFPARELLITDAVAKRAEELM
VKHPGNPTLVEMLSKISDGTDADGMEALIPALVDTPMVPLLDLMPENTHIMVIAPEKVRT
RIADLEATDAEFLAAGWEAAAMGADGPIATKGLDLEASSYRSYESLEMSASQSKLAWWTF
APTGMFEASDANTLPLDFEPGPAPRGDLDAINEMMALLLAHTTAGGRAAFIAPTQGAIKR
MVERFAEQGIPTHVATPGWEPSPGQVTLYHALSHAGLVFPKVRKHRDAQALPLVVITETD
LTGNRVGDIAGAKRRPARRRNKVDPLALTPGDLVVHETHGIGRFLKMTERTISSGDETSR
REYIVLEYAPAKRGQPGDQLYVPMDSLDMLSRYVGGEKPTLSKMGGSDWKNTKKKARAAV
REIAGELVELYAKRQAAPGHAFAPDSPWQKEMEDNFPYVETEDQMLAIDAVKEDMEKAVP
MDRVIVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHQSTFEERMAGFPITIH
GLSRFTSTAESKETLAGLASGEVDIVIGTHRLLQTGVHWKNLGLVIVDEEQRFGVEHKEH
IKALRSHVDVLTMSATPIPRTLEMSMAGIREMTTMLTPPEDRHPILTYVGPAEDKQIAAS
IRRELLRDGQVFFIHNKVADIEKKARELRDLVPEARVVVAHGQMSEDLLEQTVQGFWDRE
YDVLVCTTIVETGLDIPNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGAT
LTETSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGE
AVEAYRALADGKPVDGTVKGPTEIRVDLPVDAHIPENYINAERLRLEIYRKLATSESESD
LQLAVEEMEDRYGPIPEEVSRLLAVARLRHQMRAADLTDVAVQGTRIKIHPVDLKDSQQV
RLKRLFPGATYRAAAKAIQVSFPKAGRNVTDPLLRDVELLQWVADFITKMFDVEEIDVRG
PRAGKAVKKSTVISVGQ
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtgacacctatgctttcaggcctgctcaagatcgcagcgaccgacccgaagctcaagggc
atgatctcgaatgtgggggagagtaacctccacctgacgggtgtggatcaggcccgccca
tgggtgatcggcgcgctcgcacatcatgccccggtactggtggtcacggccaccggccgt
gaggcggaggatctcaccgcggagttgcgcgcgatgatgggcgataaggtcgcctggttc
ccctcctgggagacgctcccacatgagcgtttgtcccccggcgtggatattgtgggccgg
cgtgcgcaggtgctgaataagcttgacgacgccaagatagtcgtcaccgccgcccgagct
ttttgccaacccgtccttcaggaagcagaggggagggctcccctggtgttgtctgaaggg
tcggagttcgatttctcctcactgtccgctgagctggttttccgtgcctataaaaacgtg
gacatggtggccaagcgtggggaattcgccacccgtggtggcatcctcgatgttttcccc
accaccctggattaccccgtgcgcgtggagttctggggcgatgaggtctccgatatccgt
cagttctccgtggctgatcagcgcaccatcccggagatggcactggatcacatcgagatc
ttcccggcacgtgagctgctcatcaccgatgcggtggccaaacgcgctgaggaactcatg
gtcaaacaccccggcaaccccaccctggtggagatgctgtccaagatctccgatggcacg
gatgcagatggcatggaggccctcatcccagcactggtggataccccgatggtgccgctg
ctggatctgatgccggagaacacccacatcatggtgatcgccccggagaaggtgcgcacc
cgcatcgcggatctggaagccaccgacgcggagttcctggccgccggttgggaggccgcc
gcgatgggtgccgatggtcccatcgccaccaaggggcttgatctcgaggcgtcgtcgtac
cggagttatgaatcgctggagatgtcggcgtcgcaaagcaagcttgcgtggtggaccttc
gcgccgaccggcatgtttgaggcctctgatgccaacacgctgccgcttgactttgagccc
ggcccagccccccgcggtgatctggacgccatcaatgaaatgatggctctgctgctcgcg
cacaccaccgcaggtgggcgtgcggctttcatcgcgccgacccagggtgcgatcaagcgc
atggtggagcgtttcgccgagcaggggattccgacccatgtggccacacccggttgggag
cccagccccgggcaggtcacgttgtaccacgccctcagtcacgccggcctggtgtttccc
aaggtgcgtaaacaccgcgacgcacaggcgctgccgttggtggtgatcactgaaactgac
ctcaccggtaaccgtgtcggtgatatcgccggtgccaagaggcgacctgcccggcgccgt
aacaaggttgatccgcttgcactgacccctggtgatctggtggtgcatgaaacccacggt
atcggccgtttcctcaagatgaccgagcgcaccatctcctcaggtgatgagacctcgcgc
cgggagtacatcgtcctggaatatgcaccggccaagcgtggtcagcccggcgatcagctg
tatgtaccgatggattccctggacatgctcagccgctatgtgggtggtgagaagccgacg
ctgtccaagatgggtggttccgactggaagaacaccaagaagaaagctcgcgccgccgtc
cgggagatcgccggtgagcttgtggaactctatgccaaacggcaggcggcaccgggtcat
gccttcgccccggactccccgtggcaaaaagagatggaggataacttcccctacgtggag
accgaggaccagatgctggccatcgacgcggtcaaggaggacatggaaaaggccgtgccc
atggaccgcgtgatcgtgggcgatgtgggctatggcaagaccgaggtcgcggtacgcgcc
gcattcaaggcagtgcaggatggcaggcaggtcgcggtgctggtgcccaccacactgctg
gctcagcagcaccaatccaccttcgaggagcggatggctgggttcccgatcaccatccat
gggttgtcccggttcacctccaccgcggagtcaaaggagacccttgctggactcgcgtca
ggtgaggtggacattgtgatcggcacccaccgactgctgcaaaccggtgtgcactggaag
aacctgggcctggtcatcgtggatgaggaacagcgtttcggtgtggaacacaaagaacac
atcaaggccctgcgcagccatgttgatgttttgaccatgtccgccaccccgatcccacgc
accctggagatgtccatggccggtatccgtgagatgaccaccatgctcaccccaccagag
gaccgccacccgatcctgacctatgtgggccctgcggaggataagcagatcgctgcatcc
atccgtcgtgagctgttgcgtgatggccaggtgttcttcattcacaacaaggttgctgat
attgagaagaaggctcgtgaactgcgtgatctggttccagaagcccgcgttgtggtggca
cacggccagatgagcgaggacctgcttgagcagaccgtgcagggattctgggaccgcgaa
tatgacgtattggtgtgcaccaccatcgtggaaaccggcctggacatccccaatgccaac
accctgatcgtggagaacgcccaccacatgggcctgtcccagctgcaccagctgcgcgga
cgtgtgggtcgttcccgcgaacgcggttatgcctacttcctctacccgaagggtgccacc
ctcaccgagaccagttatgaccgcctggccaccatcgcccagaacaatgacctgggtgcc
ggcatggccgtggccatgaaggacctggagatgcgtggtgccggcaatgtgctcggcgct
gaacagtccggacatatcgccggggtgggctttgacctctatgtccgtctcgtgggcgag
gccgtggaagcctaccgcgccctggcggacggcaagcctgtcgacggcaccgtcaagggc
cccactgaaatccgtgtcgacctgcccgtggatgctcacatcccggagaactacatcaac
gccgagcgcctgcgtctggagatctaccgcaagctggccacctctgaatcagagtctgac
ctgcagttggccgtggaggagatggaagaccgatacgggcctatcccggaggaagtgtca
cgtctgctggcggtggcacgcctgcgtcatcagatgcgtgccgccgacctcaccgacgtg
gccgtccagggcacccgcatcaaaatccaccctgtggatctgaaggactcccagcaggtg
cggctcaagcgtctgttccccggagccacctaccgggcggcagccaaggcgatccaggtg
tccttccccaaggccggtcgcaatgtcaccgatccgctgctgcgtgatgttgagctgctg
cagtgggtggcggatttcatcaccaagatgttcgacgtggaggagatcgatgtgcggggg
ccgcgtgcaggtaaggctgtgaagaagtccacggtgatctcggtggggcagtag
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