Chamaea fasciata (wrentit): 136288244
Help
Entry
136288244 CDS
T11360
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cfai Chamaea fasciata (wrentit)
Pathway
cfai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
136288244 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfai03019
]
136288244 (MTREX)
03041 Spliceosome [BR:
cfai03041
]
136288244 (MTREX)
03009 Ribosome biogenesis [BR:
cfai03009
]
136288244 (MTREX)
03016 Transfer RNA biogenesis [BR:
cfai03016
]
136288244 (MTREX)
Enzymes [BR:
cfai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
136288244 (MTREX)
Messenger RNA biogenesis [BR:
cfai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
136288244 (MTREX)
Spliceosome [BR:
cfai03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
136288244 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
136288244 (MTREX)
Ribosome biogenesis [BR:
cfai03009
]
Eukaryotic type
Pre-60S particles
Helicases
136288244 (MTREX)
Transfer RNA biogenesis [BR:
cfai03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
136288244 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
136288244
NCBI-ProteinID:
XP_066037251
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MAEAFGDELFSVFEEDAAAAASGAKKSKTGPAEGARRPGKRLEEKTSVPAIVKPKREIEI
DSTENVILGKKPKLEDVLSEDVNLTDLMPQVKVQSVETVEGCTHEVALPANEEFTGLRPR
TGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFT
SPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAW
VIFDEIHYMRDTERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIY
TDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDIAKGDQKGRKGGI
KGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTGEEKKMVEEVFNNAI
DCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMG
INMPARTVLFTSASKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIG
KQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRTIPEIVERVNNL
EAQYNKIVIPNEENVVIYYRIRQQLAKLAKDIEEYIHKPKYCLPFLQPGRLVKVKNEGDD
YGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKDSLKNSATESAKPARPDERGEMQV
VPVLVHLVSAISSVRLYIPKDLRPVDNRQSVLKSVQEVQKRFPDGVPLLDPIDDMGIKDQ
GLKKVIQKIEAFEHRMYSHPLHNDPNLETIYKLCEKKAQIAMDIKVAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLTAEQATAL
LSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLETDEENYLNSFRPNLMD
VVYTWANGANFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggcctttggggatgagctcttcagcgtgttcgaggaggacgcggccgccgct
gcttctggcgccaagaagagcaaaacgggccccgccgagggtgccaggaggccgggaaaa
cgattggaagaaaaaacttcagtaccagcaatagtcaagcccaaaagggaaattgagatt
gatagtactgaaaatgttattttaggaaaaaagccgaagttggaagacgtgttatcagaa
gatgttaatttgacagatctgatgcctcaagtaaaggtgcagtctgtggaaactgttgaa
ggttgtacacatgaggttgcacttccagcaaatgaagagttcacaggtctgaggccaaga
actggaaaagctgctaaagaatatccgtttattcttgatgccttccagagagaagccatt
ctttgtgtagataataatcagtctgtgttagtgtcagctcacacatcagctggtaaaact
gtctgtgctgagtatgcaattgccctggctttgagggaaaagcagcgtgtgatattcaca
agtccaattaaagctctgagtaatcagaagtaccgtgagatgtatgaagaatttcaggat
gttggtttgatgactggggatgtcaccattaatccaacagcttcttgtttggtaatgaca
acagagatcttgaggagtatgctttacagaggttctgaggttatgcgtgaagttgcatgg
gttatttttgatgaaattcactacatgagagatacagaacgtggtgtggtttgggaagag
actattattttgcttcctgataatgtacattatgtgttcctttctgcaaccattccaaat
gcccgtcagtttgctgaatggatctgtcatcttcacaaacagccttgtcatgtgatttac
actgactatcgacccactccactgcagcattatatatttccagcaggaggagatggactc
catctggttgttgatgaaaatggagatttcagagaagataattttaatacagcaatgcaa
gtgcttagagatgcaggagacatagcaaaaggggatcagaaaggcaggaaaggaggaatt
aaaggtccttcaaatgtttttaagattgtgaagatgatcatggaaaggaatttccaacct
gtgattattttcagcttcagtaagaaagactgtgaagcctatgcacttcagatgacaaag
ttagatttcaatacaggtgaagaaaaaaaaatggttgaagaagtcttcaataatgcaatt
gattgtctctctgatgaagacaaaaagcttcctcaggttgaacatgtgcttccccttctg
aagcgaggaattggtattcatcacggtggtttgcttcctatcttaaaagaaaccatagaa
atccttttctcagagggcctaataaaggccttatttgcaacagagacttttgctatggga
attaatatgccagccagaactgtgctgtttacaagtgccagtaaatttgatgggaaagat
ttccgatggatatcttcaggtgaatacattcaaatgtcaggtcgtgcaggacgccgaggt
atggatgacagaggaatagtcattcttatggtggacgagaagatgagtccaacaattggc
aagcagcttttgaagggttcagctgatcccttaaacagtgcgttccacctgacatacaac
atggtactgaacttacttcgagtagaggaaattaaccctgaatacatgttagaaaaatca
ttttatcagttccaacattacagaactattccagaaatagtggaaagagtcaataatttg
gaagcacagtacaacaaaattgtaattcccaatgaagaaaatgtggtgatatactacaga
atccgccagcaacttgcaaaactggctaaagatattgaagagtatattcacaaaccaaag
tactgcttgccctttctacagccaggaagactggtaaaggtgaagaatgaaggcgatgac
tatggatggggtgtggttgttaatttctctaagaaatcaaatgttaagccaaattccggt
gaattggacccactgtacgtagttgaagtgctcctgcactgcagcaaagacagtttgaaa
aattctgctactgagtctgcaaagccagccagacctgatgagagaggagagatgcaggtt
gttcctgttctggtgcacctggtctcagctatcagcagtgtccgactctacataccaaaa
gacctgaggcctgttgataacaggcagagtgtgttaaagtctgtacaggaagtacagaaa
cggtttcctgatggagtgcccttgctagaccctattgatgacatgggcatcaaagaccaa
gggttgaaaaaagtaatccaaaaaatagaggcatttgagcataggatgtattcacatcct
cttcacaatgatccaaacttggaaaccatatacaaactttgtgaaaaaaaagcacagatt
gctatggatattaaagtagcaaagagagaattgaagaaagccagaactgtcctgcaaatg
gacgagctcaaatgtcgcaagcgtgttctgagaagactggggtttgccacgtcttcagat
gtgattgagatgaaaggacgggttgcttgtgaaatcagcagtgctgatgagctactcctg
acagaaatgatgttcaatggtctcttcaatgacttgactgcagaacaggcaactgcactt
ctcagctgtttcgtgtttcaagagaattccagtgaaatgccaaaattgactgagcagttg
gcaggaccacttcggcaaatgcaggagtgtgcaaaaagaatcgccaaggtgtcagcagaa
gcaaaactggaaactgatgaagaaaattacttgaattcattcagacccaacctaatggat
gttgtgtatacgtgggcaaatggagctaactttgctcacatctgcaaaatgactgatgtg
tttgaaggtagcataattcgttgcatgaggcgtctagaagaactgcttcggcagatgtgc
caggctgcaaaagccattgggaacacagaactggaaaataagtttgcagaggggattaca
aaaatcaagagagatattgtgtttgctgcaagcctttacctataa
DBGET
integrated database retrieval system
