Chamaea fasciata (wrentit): 136293069
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Entry
136293069 CDS
T11360
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cfai Chamaea fasciata (wrentit)
Brite
KEGG Orthology (KO) [BR:
cfai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfai04147
]
136293069 (COL18A1)
00535 Proteoglycans [BR:
cfai00535
]
136293069 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
cfai00536
]
136293069 (COL18A1)
Exosome [BR:
cfai04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
136293069 (COL18A1)
Proteoglycans [BR:
cfai00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
136293069 (COL18A1)
Glycosaminoglycan binding proteins [BR:
cfai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
136293069 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
136293069
NCBI-ProteinID:
XP_066045439
LinkDB
All DBs
Position
Unknown
AA seq
1823 aa
AA seq
DB search
MGVLREPGRGRTPASSLLSFLQSLRFALGSNGARFPFPMASARFGFLLLLACCFSCSEAQ
LLDWVWDSTKTTGSPAAPREGILASDLPTSEAALAPSPSPGAWGDEVVGNVTTPRRQEPD
PATAAPVGEGTAAKTMEQWDRNATGLLESTAWPSIAPPHSMSPAPGQQAASSSTKDPHLL
GTGTHKDLQLLGSGNTEDPQFLSTGTDKDPQLLGLGNVEDPQLLGSETSKDPQLLWSGTT
KDPQLLGTRTTEHLQLLRMGTTKDPQFLRSVTSKHPQLLETRTSEDLQLLGSGTTENPQL
LRMGTTEDSQLLGSGTSKEPQLMGLGTTEDLQLLALGTTEDPQLLGMMSTTDLQFLVTGH
TKGPQPLRTWTTEDPQLPGMGTTENLQLLAMRNTEDTQLQRTVTTENPELLGNTENSQLL
RTVTPEDPELLGNTENSQLLRTVTPEDPELLGNTENSQLLRTVTTENPELLGNTENPQLL
KTVTTNNPEFLGTETPTVMETQVSLQRPAGPQPESLSAEVSLLELIGDPPTEEIHRIYGP
DNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVG
VKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVVLYLDCEE
HERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDD
AEVSGDFGSGMEGGQQPSGKVEGVPGLVDAVPVTSPPVAGGSGPRSGGGSLQQAERTRAE
ETLQVSTGGTGRKGEKGEKGERGLKGDSGTSGIIGPGSVKGQKGEKGDLGIKGSAGFGYP
GSKGQKGEPGDPGPPGTLSRHADGSVVEQVTGPPGPPGKDGFPGRDGEPGDPGEDGKPGE
MGPPGFPGMPGEPGLKGEKGEPGLGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGFGG
DLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTELPGPPGLPGRDGIPGPPGPAGPPG
REGEAGQPGPKGERGDVGDLGLPGLPGPKGSKGETGPAGPPGEMGLAGLPGPIGPQGRPG
PPGPPGPPGPGYEAGFGDMEGSGLSFTPGPPGPEGPQGVPGLPGLKGEVGSPGQPGLPGP
KGDAGMPGVDGRPGLEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQVITV
SSGDKSLVAFPGPEGRPGHAGFPGPVGPKGDQGSTGPQGAPGLKGEKGEPGVIISPDGTV
VTAKVKGEKGEPGLRGPMGPLGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGS
RGPPGPPGPPGPPGPPGSIVYNNGNSFSDSSHPTFPGFHQFPGQKGEKGDTGPPGPPGQF
PYDASHFGTSLRGDKGDAGPKGEKGEPGSTPLYGPGVSGLPGPPGPQGYPGLPGPKGDSI
VGPPGPPGPQGPPGMGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGT
SGMSLGLRAVPTYQAMLSAAHELPEGSLVFLTNRQELYVRLRGGFRRVLLEEHNLIPSSA
LDNEVYDKPPTLHYAGPQPRGPLHPLRNHVPPATARPWRGDEVVANQHRLPEQPLLHHQQ
ELINGYYIHRRPDPAPVAAHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVG
LAGTFRAFLSSRLQDLYSIVRRADRATVPIVNLRDEVLFNNWEALFMGNGAPLQAGARIL
SFDGRDVLQDAGWPQKNVWHGSDAKGRRLPESYCETWRTEERAVTGQASSLASGKLLEQA
ASSCQHAFIVLCIENSFMTAAKK
NT seq
5472 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgctccgagagcctggccggggcagaactcctgcctcttccctcctttccttc
ctccagtctctccgcttcgctctcgggagcaacggagctcgttttccctttccaatggcc
tcagctcgctttgggtttctcctcctcctggcttgctgcttctcctgctccgaagcacag
ctcctggactgggtttgggacagcacgaagaccacaggaagcccagcagcaccccgcgag
ggaatcctggcgtcggacctgccaacctcagaggcagctctggctcccagcccgtcccca
ggggcgtggggtgatgaggtggtgggaaatgtcaccaccccacggcggcaggagccagat
cctgctacagcagcacctgtgggtgagggaactgcagccaaaaccatggagcagtgggac
aggaatgccacagggctgctggagagcacggcatggccaagcattgctcctccccacagc
atgtcacctgccccgggacagcaggcggccagcagctccaccaaggacccccatctcctg
gggacagggacccacaaggacctgcagctcctggggtcggggaacaccgaggatccccag
ttcctgagtacagggaccgacaaggaccctcaactcctggggttggggaatgtcgaggac
cctcagctcctggggtcagagacctctaaggacccccagctcttgtggtcagggaccacc
aaggaccctcagctcctggggacaaggaccactgaacatctgcagctcctgaggatgggg
accaccaaagacccccagttcctgaggtcagtgacctccaagcatccacagctcctggag
acaaggacttctgaggacctgcagctgctggggtcagggaccactgagaacccacagctc
ctgaggatggggaccaccgaagactcccagctcctgggttcagggacctctaaggaaccc
cagcttatggggttagggactactgaagacctgcagctgctggcgctgggcaccactgag
gacccacagctcctagggatgatgagtaccacagacctgcagttcctggtgacagggcac
accaagggcccacagcccctgaggacatggaccacagaagacccacagctcccaggcatg
gggaccactgagaatctgcagctcctggcgatgaggaacaccgaggacacacagctccag
aggacagtgaccactgagaacccagagctcctggggaacactgaaaactcacagctcctg
aggacagtgacccctgaggacccagagctcctggggaacactgaaaactcacagctcctg
aggacagtgacccctgaggacccagagctcctggggaacactgaaaactcacagctcctg
aggacagtgaccactgagaacccagagctcctggggaatactgagaacccacagctcctg
aagacagtgaccaccaacaacccagagttcctggggacggaaactcctacagtaatggag
acacaggtgtccttgcagagaccagcaggtccccagccagagagtttgagtgctgaggtc
agcctgctggagctaatcggggacccaccaacggaggagatccacagaatttatggcccc
gacaacaaccctggctacgtcttcggtcccaatgccaacacgggccaggtggcccggtac
cacctgccaagccctttctaccgggacttctcgctgctgttccacatccagcccaccaca
ccccgggccggcgtgctcttcgccgtcacggactcctcgcaaagcatcatctacgtgggc
gtcaagctctcggagctgcgggcaggccagcagcagatcatcttctactacacggagccg
ggctcgcccagctcctacccggctgccaccttcaccgtgcccaccctgctcaaccagtgg
acacgcttcgccatcagcgtggaggaggaggaagttgtcctctacctggactgtgaggag
cacgagcgtgtccgcttcgagcgctccccagatgagatggagctggaagagggctctggg
ctcttcgttgctcaggctggaggggctgacccggataaataccagggggtgattgcagat
ttgaagctccgaggggacccgcgggcggctgagcgccagtgcgaggaagaggaggatgac
gcggaggtctctggggattttggcagcgggatggaaggtggtcagcagccttcgggcaag
gtcgagggtgtcccagggctggtggatgctgtccctgtgacctccccacccgtggcgggg
ggcagtggtccgaggagtggcggggggtccctgcagcaagctgagaggaccagggcagag
gagacgctgcaggtctccacaggaggcactggccggaaaggcgaaaagggggagaagggg
gaacgtggcttgaaaggggactcagggaccagtggcatcatagggccaggcagtgtcaag
ggtcaaaagggagagaaaggagacctgggcatcaagggcagtgctggatttggctaccct
ggctctaagggccaaaaaggagaaccaggtgaccctggaccccctgggaccctctctcgg
catgctgatggctctgtggtggagcaggtcaccggccccccagggccaccggggaaggat
ggattccctggcagggacggtgagcctggagatcctggcgaggatggcaaacccggtgaa
atggggcccccggggttccccgggatgccaggggagccaggcctgaagggggagaagggt
gagccaggcctggggccaaggggaccccctggaccacctggccctccgggaccaccagga
ccctcctccaagaacgacaagctgaccttcattgacatggagggctctggcttcggtggt
gacctggagagcctgaggggtccacgagggccgcctggtcccccagggccacctggtgtg
cccggtttgccaggggagccaggacggtttgggatgaaccgcacggagctgccaggacca
cctgggctgccaggcagggatgggatccctgggcccccagggccagcgggtcctccagga
agagagggagaagctgggcaaccggggcccaaaggagagcggggtgatgtgggtgacctc
ggcctccctggcctaccgggacccaagggcagcaaaggagaaacaggaccagcaggaccc
ccaggagaaatgggcttagctggccttcccgggcccattggaccccaagggcgaccaggg
ccccccggccccccgggaccaccggggccaggctatgaggctggatttggtgacatggag
ggctcggggctgtcattcacccctggaccacctggacctgaaggaccacagggtgtgccg
ggactgccggggttgaagggagaggtgggcagccccggacaacctggcttgccgggacca
aagggagacgctggcatgcctggtgtggatggccgccctggtctggagggcttccctgga
ccacagggacccaaaggtgacaaaggcagcactggtgagaagggagagcgaggccaagat
ggagtggggctgcctggcccccctggcccacctggtccccctggacaggtcatcactgtt
tccagtggagataagtccttggtggcttttcctggtccagagggcagaccaggccacgct
ggcttcccgggtccagtgggaccgaaaggagaccaggggtcaactggtccccagggtgcc
ccagggttgaagggggagaagggggagcctggtgtcatcatcagccctgatgggacggtg
gtcactgccaaggtgaaaggagaaaagggggagccgggactgcggggcccgatgggaccg
ttgggtcccccaggacgagcagggatgaaaggagagattggctttccaggcagacccgga
cgtcccggcatgaacgggctgaagggcgagaagggtgaccctgcggatgtgctgggctcg
cggggtcccccaggacccccaggacccccagggcctcctgggccacctggcagcatagtc
tacaacaatggcaactccttcagcgactccagccatccgacgttccctggtttccatcag
ttcccaggacaaaagggggagaaaggtgacactggacccccaggaccccctggccagttc
ccctatgatgcgagtcactttggtactagcctgcggggtgacaagggagatgcaggtcct
aagggtgagaagggcgagccgggcagcaccccactctacggtcctggagtttctggactt
ccagggcctccaggaccccagggataccctgggctgccgggtcccaagggggacagtatt
gttgggccaccggggcctccaggacctcagggtccccctggtatgggatacgaggggcgg
cagggcccccctggccctcctggtccgcctgggccaccttccttcccaggtccccacaga
caagctgtcagcatccctggacccccaggaccaccaggaccccccggaccaccaggcact
agtgggatgtccttggggctccgggccgtgcccacgtaccaggcaatgctgagcgccgca
catgagctacccgagggcagcctcgtcttcctgaccaacaggcaggagctctacgtccgc
ctgcgcgggggcttccgcagggtgctgctggaagagcacaacctgatccctagttcagct
ctggacaacgaggtgtatgacaagccacctaccctccactatgccggcccccagccccgc
gggcccctgcacccgctgcgcaaccacgtcccgccggccaccgcccgtccctggcgtggg
gacgaggtggtggccaaccagcaccggctgcccgagcagcccctgctgcaccaccagcag
gagctcatcaatgggtactacatccaccgccggccagatcctgcccccgtggccgctcac
gtgcaccaggacttccagcctgctcttcacctggtggccctgaacaccccgctgagcggc
ggcatgcgtggcatccggggcgccgatttccagtgcttccagcaagcccggcaggttggg
ctggccggcaccttccgcgccttcctgtcctcgcgcctgcaggatctctacagcatcgtg
cgcagggctgaccgtgccaccgtccccattgtcaacctccgagatgaagtgctcttcaat
aactgggaagcccttttcatgggcaacggggccccactgcaagccggtgcccgcatcctc
tcctttgatggccgggatgtcctgcaggatgcaggatggccacagaaaaatgtctggcac
ggctcagatgccaagggccggcgcctgcccgagagctactgcgagacatggcggacagag
gagcgcgcggtcaccggccaggcttcctccctggcctctggaaagctgctggagcaggcg
gccagcagctgccagcatgccttcatcgtcctctgcatcgagaacagcttcatgactgcc
gccaaaaagtga
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integrated database retrieval system
