Chamaea fasciata (wrentit): 136295035
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Entry
136295035 CDS
T11360
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cfai Chamaea fasciata (wrentit)
Pathway
cfai03008
Ribosome biogenesis in eukaryotes
cfai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfai00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
136295035 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
136295035 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfai03019
]
136295035 (XRN1)
03009 Ribosome biogenesis [BR:
cfai03009
]
136295035 (XRN1)
03016 Transfer RNA biogenesis [BR:
cfai03016
]
136295035 (XRN1)
03036 Chromosome and associated proteins [BR:
cfai03036
]
136295035 (XRN1)
Messenger RNA biogenesis [BR:
cfai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
136295035 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
136295035 (XRN1)
Ribosome biogenesis [BR:
cfai03009
]
Eukaryotic type
Pre-60S particles
RNases
136295035 (XRN1)
Transfer RNA biogenesis [BR:
cfai03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
136295035 (XRN1)
Chromosome and associated proteins [BR:
cfai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
136295035 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
136295035
NCBI-ProteinID:
XP_066049354
LinkDB
All DBs
Position
Unknown
AA seq
1770 aa
AA seq
DB search
MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKI
FANIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
TLPTEARFDSNCITPGTEFMARLNEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHK
IMEFIRSEKAKPHHDPNTRHCLYGLDADLIMLGLTSHEAHFALLREEVRFGGKKAQRVCA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFEYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYRTYMAILPELGGYINENGHLNLERFEKYLTRLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARKNKQKKQKAQENSISLAALEKNEGEVTPKTTLEDEPED
DDLFETEFRQYKRTYYMTKMGVEVVSDAFLADQAECYVQAIQWILHYYYHGVQSWSWYYP
YHYAPYLSDIHNISELKIKFELGKPFMPFEQLLAVLPAASKDLLPKCYQHLMTSQDSPII
EYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKGLKEEEKRRNTHSACLMYW
YDKDAEFQYLSPWPEKFPAIERCHTRYKTIPLDAWHVEITHNKITKINKNALYFCGFPTL
KHIKHKFYLKKSGVQVFQQSSHGENMMLEIIVDENSKDQMVENAASSVLGKRVFVNWPHL
EEARVVAVSDGETKFYLEEPHGTQKLYMGNAVPPTKVAYVGDKEQSMWVKEVQGISEQYQ
RRKGIIIHETSVVVYAQLLTGNRYQLKQNGEVYLEKQWSKQVLPFVYQTVVKDIKAFDSR
FSNIKTLDDLFPPGSTAFMLGSPYYGCMGEVQDSHDVIPEGRIRVVFNIPCEPQLETLIQ
NQHKYSVKYNPAYILASRLGVSGYLVSRFTGSIFIGRGSKKNPHGDHKANVGLNLKFNKK
NEEVPGYTKKVGNEWMYSSAVEQLLAEYLERVPELFNYVAKNSQEDICYEDDIWPGEDEN
GAEKVQEIVAWLKAHPVSALSRSSCDLQILDAAIVEKIEEEIEKCKQRKSNKKVRVTVKP
HLLYRPLEQQKGVVPDRDAEYRLFDRVVNVRENFSVPVGLRGTIIGIKGATRETDVLFEV
LFDEEFLGGLTIRCSPARGYRLPSSALINLSHGSRSEVGNQKLMAIVKPQPAVNNYNSYT
SDLSSVCSQKMHLGGLNHSPRSLFVPTQQLNGRQHYNLRAENQGNSNSPQKGSFLSGNQK
NKAQSKQDDEFCSIWQSLQTSGKSHHVQQNMHEKGAVLPQEIKLGTGHQFYKPGFNDGSF
KCQQRKQEPYKKFKEDSKVTRGESQPHSKMSNQQNFTGGNKYNVKLLKRNGSPNMPLIQK
AAVDGPCTGGKKDNELESLLASLKISKENEVQTYSKEARATNEEHLSPQSFAMKGTQMLK
EILKIDGSDLQTRNEVKSQVNDVPAPSGRQDCHGAAVQYRPTKKMAAYMNKHSPGGPQNT
PATEAGGHPFTCPQPALSTVSELSRVCSLLGMSQPDFSFLKTPQTMTVCHIKLSNGLLVH
GPQCHSEAEAKEKAALFALQRLGSIGVNFASPPPLPPPVFPNYQPLGVPVPPASIPPVFA
QPPANMMPPSSHMFGPVSWGTPVPKHYYPGSYPGNVSLAGTIPVGSHNQFIPLQVTKKRA
ASKKKIELKEFQSSPQAAPLKNEQPMSSDHTQQDSSSAPLKSPQAAQSTVSFQDNVATPS
TPHNKSTPNTSSKRKPRKLAVNFGAPKSSE
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtggatctcggagcggtacccctgcctcagccaggtg
ctgaaggagcatcagattccagagtttgacaacttatacctggacatgaatggcatcata
catcagtgctcacatccaaatgatgacgatgtccacttcagaatctcagaagataagatt
tttgccaatatttttcactatttggaagtcctgtttcgcattattaagccaagaaaagtt
ttcttcatggcagttgatggagtagctccaagagcaaaaatgaatcagcagcgtgggaga
cgtttcagatcagcaaaagaggcagaggacaaaattaaaaaggcattggaaaagggagaa
actctcccgacagaagccaggtttgactccaactgtattacaccaggaactgaattcatg
gccagattgaatgagcatcttaaatattttgtaaatatgaagatttccacagacaaatcc
tggcaaggaataacagtctacttatcaggccatgagactccaggggaaggtgagcataaa
attatggagttcatcagatcagaaaaagcaaagccccatcatgatccaaacacaagacac
tgtctctatggcttagacgctgacttgataatgctgggattaacaagtcatgaggcacac
tttgcgctcttaagagaagaagtcagatttggtggtaaaaaggctcaaagagtatgtgca
ccagaggaaaccacgtttcatttactgcacttatcactgatgagagaatatattgattat
gaattttccccagtaaaagacaagatttcttttgaatatgatattgaaaggataatagat
gattggatcttaatgggtttccttgtgggaaatgattttattcctcatctacctcattta
cacattaatcatgatgcactgccgctactttatagaacatacatggctatcttgccagaa
ctgggaggttacatcaatgagaatgggcatctgaatttagaacgttttgagaaatatctc
acaagattgtcagattttgatcgtgaacacttcagtgaagtctttgttgacctaaaatgg
tttgaaagtaaagtgggcaataaatacctcaacgaggcagctgggattgcagcagaggaa
gccagaaaaaataaacaaaagaaacaaaaggctcaggaaaattctatatctttggctgct
ttagaaaaaaatgaaggtgaagtaacccctaaaaccacattggaagatgaaccagaagat
gatgatctgtttgaaactgagtttaggcaatacaaaagaacttactacatgactaaaatg
ggtgtagaagtagtgtctgatgccttcttggctgatcaagctgaatgttatgtccaggca
atacaatggattttgcattattactaccatggagttcagtcatggagctggtattaccct
tatcattatgcaccttacctgtcagatattcacaacatcagtgaactcaaaatcaaattt
gaacttggaaaacctttcatgccatttgaacagcttcttgcggtacttccagcagctagc
aaagatctgctgcctaaatgttaccagcatttgatgactagtcaagactctcctattata
gaatattatccacctgattttaaaactgacctaaatggtaaacagcaggaatgggaagct
gtagtattaatcccgttcattgatgagaaacgactgctgcaggccatggaatcctgtaat
aagggcctaaaagaagaggagaaacgaagaaacactcacagtgcttgcttaatgtactgg
tatgacaaagatgctgagttccagtacctgtcaccatggccagagaaattccctgcaata
gaacgatgtcacacgaggtataaaacaatacctttggatgcttggcatgtagaaataacc
cacaataagataactaaaattaacaagaatgcattatatttttgtggatttcctacttta
aagcacattaaacataagttctatcttaaaaaaagtggtgtacaagtgtttcagcaaagc
agccatggagagaacatgatgttagaaatcatagttgatgagaactcaaaagaccagatg
gtagaaaatgctgccagttcagtacttggaaagcgagtttttgttaactggccccatctt
gaagaagccagagttgttgcagtgtcagatggagaaacgaagttttatttggaagaacca
catggcacacagaagctttacatgggaaatgcagtacccccaactaaagtggcttatgtt
ggagataaggagcaaagcatgtgggtaaaagaagttcaaggcatttcagagcagtaccag
agaaggaaaggaataattatccatgaaacatcagtagttgtttatgcacagttactcact
ggtaatagatatcaactaaaacaaaatggagaagtttatttggagaagcagtggtctaaa
caagttcttccttttgtttaccaaactgttgtcaaggatatcaaagcctttgactctcgt
ttttcaaacatcaaaactctggatgatttgtttcctcctggaagtacggccttcatgctt
ggatctccttactacggctgcatgggagaagttcaggattcccatgatgtgatcccagaa
ggtagaatccgggtagtttttaatattccatgtgaaccccagcttgaaactttaatacag
aaccagcataaatattctgtgaaatacaatcctgcatatattttggccagccgtcttgga
gtaagtggatatcttgtctccagatttacagggagtatctttattggaagaggatcaaag
aagaatcctcatggtgatcacaaagcaaatgtggggctaaacctgaagttcaataagaaa
aatgaagaagttcctggctatactaagaaagttggaaacgaatggatgtattcttctgca
gtagaacaattacttgctgagtatttagaaagggtgcctgaactatttaattatgtagcc
aagaacagccaggaagatatctgctatgaagatgacatttggcctggagaggatgagaac
ggagctgagaaagtgcaagaaattgttgcctggttaaaagcacatcctgtgtccgctttg
tctcgctcgtcttgtgacttgcaaattttggatgcagccattgttgagaaaattgaagaa
gaaatagagaaatgcaagcagaggaagagcaacaagaaggtgcgagtaactgtgaaaccc
catttgctgtacagaccattagagcagcagaagggggttgttccagatcgagatgcagag
tacaggttgtttgaccgtgttgtcaatgtcagagagaacttttctgttcctgttggtcta
cgaggcaccattattggaattaaaggagctactagagaaacagatgtgctctttgaagtt
ttgtttgatgaagaattccttggaggcctcactataaggtgctcacctgccagaggttat
cgcctgccctcaagtgccttaattaacctgtctcatggtagtcggtcagaagtgggaaac
caaaagctgatggccatagttaaacctcagccagcagtgaataactacaactcatataca
tctgatctctcgtctgtatgctcacaaaaaatgcatctgggaggcctcaaccattctcct
cgctccctttttgttcctactcaacaactgaatggaagacagcattacaatctcagggct
gaaaatcagggcaactctaactcaccccagaaaggatcatttctgagtggcaatcagaaa
aataaagcacaaagtaagcaagatgatgaattctgcagcatatggcagtcattgcagact
tctgggaagtctcatcacgttcaacaaaacatgcatgagaagggtgcagttctacctcag
gaaatcaagctgggaactggccatcagttttataagccaggcttcaatgacggcagcttt
aaatgtcagcaaagaaaacaggagccttataaaaaatttaaagaagattccaaagttaca
agaggcgaaagtcaaccacatagtaaaatgtcaaaccagcagaatttcacaggtgggaat
aagtacaatgtcaaacttttgaagaggaatggaagtcccaacatgcctttaattcagaag
gctgcagttgatggtccctgcacaggtggaaagaaggacaatgaactggaaagccttcta
gcttctttgaaaatttccaaagaaaatgaagtgcagacttattccaaggaagcaagagct
acaaatgaggaacatctgtcaccacagtcgtttgctatgaaaggaacacagatgctcaaa
gagattttgaagatagatggctcagatctgcaaacaaggaatgaagtgaaatcacaagtt
aatgatgttcctgctccctctggtagacaggattgccatggagctgctgtgcaatacaga
ccaacaaaaaaaatggctgcttatatgaacaagcatagccctggaggcccccagaacaca
ccagcgacagaagctggaggtcatcctttcacttgtccacagcctgcactgtctactgtt
tctgaactttctcgtgtttgttctcttcttggaatgtcgcaaccagatttctctttccta
aaaacaccacagaccatgacagtttgccacataaagctgtcaaatggtttattggttcac
gggccgcagtgtcattctgaagctgaagcaaaggagaaagctgcgctttttgctttacag
cgcttgggttctataggagtaaactttgcttcgcctccacctctgcctcccccagtgttt
ccaaattaccagccactaggagttcctgtaccacctgcatcaattcctccagtatttgca
cagccccctgctaatatgatgcctccatcatctcacatgtttggtccagtgtcctgggga
actccagtgcctaagcattattatcctggctcctatccaggaaatgtgtctcttgcagga
actataccagttggttctcacaaccagtttatacctctgcaggtaactaaaaaaagggct
gctagcaagaaaaaaattgaactcaaggagtttcagagttcccctcaagctgcaccacta
aagaatgaacagccaatgtcttctgaccacactcagcaagatagttcttcagctccttta
aaatctcctcaagctgctcaatccactgtttcatttcaagacaatgtggctactccaagt
actcctcataacaaatcaacaccaaacacttccagcaagcgaaagccaagaaaactggct
gtcaattttggcgcaccaaaatcttcagaataa
DBGET
integrated database retrieval system
