Chamaea fasciata (wrentit): 136301702
Help
Entry
136301702 CDS
T11360
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cfai
Chamaea fasciata (wrentit)
Pathway
cfai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
136301702 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfai03041
]
136301702 (DDX42)
Enzymes [BR:
cfai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
136301702 (DDX42)
Spliceosome [BR:
cfai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
136301702 (DDX42)
Complex B
136301702 (DDX42)
Complex C
U2 SnRNP specific factors
136301702 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
136301702
NCBI-ProteinID:
XP_066060936
LinkDB
All DBs
Position
Unknown
AA seq
1058 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGSAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQSSANPESPIAATAAAKGVPGFASTGTLSSVPP
FPSGGAPPFNNANAGASSREGGGGLGGIARERYGDNRNSRHGEAPRRGEGGGRGEGGGRG
EGGGRGEGGGRGEGGGRGEGGGRGEGGGRGEGGGRGEGGGRYNDAQRYGDAQPQRYGDAQ
RYNDAQRYNDAQRYNDAQPQRYSDAQRYNDAQRYNDAQPQRYSDGQRYNDAQRYNDAQPQ
RYSDGQRYNDVPRHGEGGGRHGDPARHGDGRHGDIHRHGEGRHFTDAPGGGNRNNGDSRN
SSESRNGESRKEANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtgggcctggcacgaagagaggctttgggtttggtggatttgcc
ataactcctggcaagaaggaggagcccaagctgtcccagcagtcccacagcgccttcggc
agcgccgggtcctcggcggcgttcgccaaatcggggccccctcagctgccttccttctac
aagattgggtccaagagagccaactttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggagctgccctacattcccgcggagaactcgcccactcggcag
cagttccattccaaatcggccgactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtac
tttcgctacatggctgagaaccccactgctggtgtggtgcaggaggaggaggaggataac
ctggagtatgacagtgatgggaacccaattgcaccgtccaaaaaaatcatcgatcctctt
ccacctattgaccattcagagattgaatatccaccatttgagaaaaacttctatgatgaa
catgaggagatcaccagcctgaccccacagcaagtggtggagttacggcacaagctgaat
ctgcgggtctccggggctgctcctccaagacctggcagtagttttgctcattttgggttt
gatgagcaactgatgcatcagattaggaaatctgagtatacccaacccactccaatacaa
tgtcagggtgttccagtggcactaagcggcagagacatgatcgggatagccaagactgga
agtgggaagacagctgccttcatctggccaatgctgatccacatcatggatcagaaggag
cttgaacctggggatggtcccattgcagtgatcgtctgccccaccagggagctctgccag
cagatccactccgagtgcaagcgcttcggcaaggcctacaacctgcgctccgtggccgtg
tacggaggagggagcatgtgggagcaggccaaggccctgcaggagggggcagagatcgtg
gtctgcactccaggtcgtttgattgatcatgtgaaaaagaaagcgacaaacctgcagaga
gtcacttaccttgtgtttgatgaagctgacagaatgttcgatatggggtttgagtatcag
gtcagatcaatcgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggcccgggatattctgatcgacccaattcgggttgtg
caaggagacattggagaggcaaatgaggacgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctggtggagttcacgtcctccgggagc
gtcctcctctttgtcaccaagaaagccaacgcagaggagctggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagcgagaggaataaagtc
atttcggagtttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactacgacgtggctcgggacatagac
acccacacgcaccggatcggccgcaccggccgcgcgggggagaagggggtggcctacact
ctgctgacccccaaggacagcaacttcgctggggacctcgtcaggaacctggagggagcc
aaccagcacgtctccaaagagctgctggatttggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaagggcaagaagctgaatattggtggtggtggcttgggatac
cgtgaacgccccgggctgggctcagaaaacactgaccgtggaaacaacaacagtgtgatg
agcaactacgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagtggctggaccagtgccgggagcctgaactcc
gtgccgacgagttcagcgcagcagagcagcgccaaccccgagagccccatcgcagccacc
gcggcggccaagggcgtgcccggcttcgccagcacgggcaccctgagcagcgtgccgccc
ttcccgagcggcggagcgccgcccttcaacaacgcgaacgccggcgccagcagccgagag
ggcggcggcggccttggtggcattgccagagagcgctacggcgacaaccggaacagtcgg
cacggcgaggccccgcggcgcggggagggcggcggccgaggggaaggtgggggccgaggg
gaaggtgggggccgcggggaaggtgggggccgcggggagggtgggggccgaggagaaggc
ggcggccgaggagaaggcggcggccgaggggaaggcggcggccgaggagaaggcggcggc
cgctacaacgatgcccagcgttacggcgacgcccagccgcagcgatacggcgatgcccag
cgttacaatgacgcccagcgttacaacgacgcccagcgatataacgacgcccagccgcag
cgttacagcgatgcccagcgttacaacgacgcccagcgatataacgacgcccaaccccag
cgctacagcgatggccagcgctacaacgacgcccagcgatataacgacgcccagccgcag
cgctacagcgatggccagcgctacaacgatgtcccgcgccacggcgagggcggcggccgg
cacggcgaccccgcccggcacggcgacggtcgccacggcgacatccatcgccacggcgag
ggccggcacttcaccgacgcgccgggcggcggcaaccgcaacaacggggacagcaggaac
agcagcgagagcaggaacggagagagcaggaaggaggccaacagccgagacaacaagaca
gatggttttgctgtcccggagcccccgaaacggaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
