Citrobacter farmeri: CI104_02925
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Entry
CI104_02925 CDS
T05012
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI104_02925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfar03019
]
CI104_02925
03009 Ribosome biogenesis [BR:
cfar03009
]
CI104_02925
Enzymes [BR:
cfar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CI104_02925
Messenger RNA biogenesis [BR:
cfar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI104_02925
Ribosome biogenesis [BR:
cfar03009
]
Prokaryotic type
rRNA helicases
CI104_02925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AST78107
LinkDB
All DBs
Position
575082..577010
Genome browser
AA seq
642 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKLQPTAEDEELDIETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRAPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLVGDAQPHTERRGGGRSFGGERREG
GRGFGGERREGGRGDGRRFSGERREGSRAPRREDGTSRRRDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgatgttctgggtatggcccagaccggtagcggcaaaaccgcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggcaccgacc
cgcgaactggcggttcaggtagccgaagccatgacggatttctctaaacacatgcgcggc
gtgaacgtggttgccctttacggcggccagcgttatgacgtgcagttacgcgccctgcgt
caagggccgcagatcgtcgtcggtacgccgggtcgtctgcttgatcacttaaaacgcggt
accctggacctgtctcgcctgagcggtctggtactggacgaagccgatgaaatgctgcgt
atgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggagggtcatcagacc
gctctgttctctgccaccatgccggaagcgattcgtcgcattacccgtcgtttcatgaaa
gaaccgcaggaagtgcgcattcagtccagcgtcactacccgtccggacatcagccagagc
tactggactgtctggggcatgcgtaagaatgaagcgctggtgcgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgacgctggaagtggctgaa
gcgctggagcgtagcggctataacagtgccgcgctgaacggcgacatgaaccaggcgctg
cgtgagcagaccctggagcgtctgaaagatggtcgtctggatatcctgattgccaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggtagtaaactacgatatcccg
atggattcagagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgcaggc
cgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacatcgaacgcacc
atgaagctgaccattccggaagttgaactgccgaacgcagaactgctgggcaaacgccgt
ctggaaaaatttgcggccaaagtacagcagcagttggaaagcagcgatctggatcagtac
cgtgcgctgctggctaaactgcagccgactgcggaagacgaagagctggatatcgaaacc
ctggctgccgctctgctgaagatggcccagggcgaacgtccgctgattctgccgccagat
gcgccgatgcgtccgaagcgtgaattccgcgatcgtgacgatcgtggtcctcgtgaccgc
aacgatcgcgctccgcgtggcgaccgtgaagaccgtccgcgtcgtgaacgtcgcgatgtt
ggcgatatgcagctgtatcgcattgaagtgggccgcgatgacggtgttgaagttcgtcat
atcgttggcgcgatcgccaacgaaggcgacatcagcagccgttacattggtaacatcaag
ctgttcgcttcgcactccaccatcgaactgccgaaaggtatgccgggtgaagtattgcag
cactttacgcgtacccgcatcctcaacaaaccgatgaatatgcagttggtgggcgatgca
cagccgcacactgaacgtcgtggcggtggtcgtagcttcggcggtgagcgtcgtgaaggt
ggtcgcggtttcggcggtgagcgtcgtgaaggtggccgtggtgatggtcgtcgtttcagc
ggtgaacgtcgtgaaggtagccgtgcgccacgtcgtgaagacggtaccagccgtcgtcgt
gacgcgtaa
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