Citrobacter farmeri: CI104_05685
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Entry
CI104_05685 CDS
T05012
Name
(GenBank) type IV secretion protein Rhs
Organism
cfar
Citrobacter farmeri
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
WHH
PAAR_motif
TEN_YD-shell
RHS
DUF4595
Colicin-DNase
TM7S3_TM198
Motif
Other DBs
NCBI-ProteinID:
AST78610
UniProt:
A0A8H9NZQ4
LinkDB
All DBs
Position
1141748..1145857
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AA seq
1369 aa
AA seq
DB search
MYEAARVDDPIYHTSALAGFLIGAIIGIAIIAVAAFAFFTCGFLAGLVLGFLADQIASGV
LKLGEAIGRSIHHTAGKILTGSDNVSTNSRPAARAVLSTVICEDHSPEIRIAQGSCNIYI
NSQPAARKDDHTECDAVIEDGSPNVFLGGGTQTVLEISSEIPDWLRQVVDVLFVVASLLG
GLAGAARQAEKLGAKFGVKCAGKFIGGQLVGMGVSEAVMGFFGNPVDVTTGQKILLPETD
FTLTGRLPVTCSRFYASHLEAEGLLGRGWRLNWEINLREDEIYITFIGVQGRELSYPKEM
LTPGHQIFDPEEQFYLSRLHDGRYVLHYTDRSYYVFDEFDDHGVAPLLFMETPHRQRIAF
GRENGRLVRVASSSGHHLLLHRTLTPAGERLSHIELVKGGRPGNLVEYRYDDNGQLTGVM
DRAGVTVRQFAYENGLMTEHSNATGFTCIYRWEDIEGFPRVVEHTTSDGEDYRFHYDFTG
GQTVVTGRPEQKWQWWFDEQTYVTAHRTPGGGMYRFTYNENHFPVAVELPGERRVALEYD
TLSRVVKETDPVGRVTQTQWNGSFAEITRRVLDDDHIWKAGYNEHGQVIQETDPEGRVTR
YGYDEQGLAVSRTDARGGMVVLVHDARGQLTRYTDCSGRTTGYEYDEDGNLTAVTDAEGK
TVRIRYNRLGLPETVSHPGKQQDRYTWNALGLLSSHRRITGSVQSWQYTPRGLLARHTDE
EKRETRWHYTVEGWIASLTNGNGAQYRFSHDADGRLTGEQRPDGLIRMFALNASGHLTLI
QTQGTQGGVRNERQQRDALGRLLGTETEHSTRRFSYNRLDQITEVILSPTEEGERLHHMQ
ADRVAFAYDRSGWLTAEHSVHGNIKYRRDALGNPTDITLPDGQHISHLYYGSGHLLQTAL
DGITVSEYERDSLHRQVMRTQGLLATFSGYNADNRLSWQRSLMNGSQNPQQAGKLPSHGD
SVTARDYIWNADGEVGGINDKLRGCQVFSYDRSGWLTGRTGQMYDHDHYYYDRAGNLLAD
EYQNAVTDNRLPGYGRDRYGYNEWGELTDRRDQQLAWNAQGQLTRVISGNSETRYRYDAL
GRRISKATYGRHTDQREQRRTTFVWEGFRLLQETTWQGKRTYLYDAEQPYTPVASVTGCG
ESRKIGYYHTDVTGTVQEVTAADGTLVWAGYQTGFGENRGDISNSGAYFEQPLRLPGQYF
DEETGLHYNLFRYYAPECGRFVSQDPIGLAGGINTYQYAPNPLSWIDPLGLSRYPGVDFS
GTDGLYPGGVNTVTREMTGGRYSDFKSANEIAGYKNSTGNITGRSHPEGYTWHHMNDYNP
KTNTSTMQLVKIDAHEATYPHSGSVSQFEKYHGVKYENAEAKSIGAKCG
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagccgcacgggtggatgaccccatctaccacaccagcgccctggccgggttt
ctgattggtgccattattggcatcgccattattgctgtcgccgcctttgctttctttact
tgtggttttttggccgggctggttctgggatttctggctgaccagatagcctccggggtg
ttgaaactgggtgaggccatcgggcgttcgatacatcacacggcaggaaaaattctgacc
ggctctgataatgtcagtaccaacagccgacctgccgcccgtgccgtactgagtacggtg
atatgcgaagatcattccccggaaatccgtatagcccagggttcttgcaatatctacatc
aacagccagcccgccgcccgtaaggatgaccacactgaatgtgatgcagtgattgaggac
ggctctcccaatgtcttccttggtggtggtacgcagacggtgctggaaatcagttctgaa
atcccggactggctgcgtcaggtggtggatgtgctgtttgtggttgccagcctgctgggc
ggtctggccggagccgcacgccaggcggaaaagctgggggcaaaattcggcgtaaaatgt
gcggggaaatttatcggcggacaactggtcggaatgggggtttccgaggccgtgatggga
tttttcggcaatccggtggatgtcaccacagggcaaaaaatcctgctgccggagaccgat
ttcaccctgacgggccgcctgcccgttacttgctcacgcttttatgccagccacctggaa
gcagagggactcctgggcagaggatggcggctaaactgggagataaacctgcgtgaggat
gagatatatatcaccttcatcggtgtacagggtcgtgagctgagttatccgaaagaaatg
ctgacgccgggtcatcagatattcgacccggaagagcagttctacctgagccgcctgcat
gacgggcgctatgtgctgcattacaccgatcgcagctattacgtgtttgatgaatttgat
gaccacggcgtcgcgccgttactttttatggagacgccgcaccggcagcgtattgccttc
gggcgcgagaacggcaggctggtgcgggtagcctccagtagcggacatcatttgctgttg
caccgcacgttgacgcctgcaggagaacgactttcgcatattgaactggtgaagggcggt
cgtcccggtaacctggtggaatatcgttacgatgataacgggcaactgaccggcgtgatg
gaccgggccggtgtgacggtgcgccagtttgcctatgaaaatggcctgatgacggaacac
agcaacgcgacgggcttcacctgtatttaccgctgggaagatattgagggttttccccgc
gtggtggagcacacgaccagcgacggcgaggattaccggttccactatgattttaccggt
ggtcagacggtagtgactggcaggccggagcagaagtggcaatggtggtttgatgaacag
acgtatgtgaccgcgcatcggacgccgggcggggggatgtaccgcttcacctacaacgaa
aaccatttcccggtggcagtggagctgcccggagaacgcagggtggcgctggaatacgac
accctgagccgggtggtgaaagagacggacccggtgggtagggttacacagacgcagtgg
aacggcagttttgctgaaatcacgcgccgtgtgctggatgacgaccatatctggaaggcg
ggttacaacgaacacgggcaggtgatacaggagacggacccggaagggcgcgtcacgcgg
tacgggtatgatgaacagggtctggcggtcagccgcacggatgcgcggggcggcatggtt
gtgctggtgcatgatgcgcgaggccagctgacgcgttacaccgactgttcagggcgcacc
acgggttatgaatacgatgaagacggcaacctgacggcagtcactgacgcggaaggaaaa
acggtacgcatccgctataaccgtctggggctgccggagacggtcagccaccccggtaaa
cagcaggaccgttacacctggaacgcgctggggttactgagcagccaccgccgtatcacg
ggcagcgtgcagagctggcagtatacgccgcgcgggctgctggcgcgccacacggatgaa
gagaagcgggagacgcgctggcattataccgtggaggggtggattgccagcctgaccaac
ggcaacggggcacagtaccggttcagccacgatgcggacggacggctgacgggagaacag
cgcccggacggcctgatacggatgtttgcgctgaacgcgagcggccatctgacgctcata
cagacgcagggcacacagggcggcgtgcgcaatgagaggcagcagcgtgacgcgctgggc
cgcttgctgggtacggagacggaacacagcacccgccgtttcagctacaaccgtcttgac
cagataacggaggtcatactcagcccgacagaagaaggcgagcggctgcaccacatgcag
gcagaccgggttgcgtttgcgtatgaccgtagcggctggctgacggcagagcacagcgtg
cacggcaatataaaataccggcgcgacgcgctgggcaatcccaccgacatcacattaccg
gacgggcagcatatcagccatctttactacggcagcgggcacctgttacagacggcgctg
gacggcatcacggtgagtgaatatgagcgtgacagcctgcaccggcaggtgatgcgcacg
caggggctacttgcgacgttcagcgggtacaacgctgacaaccggttaagctggcagcgc
agcctgatgaacggcagccagaacccgcagcaggccggtaaactcccgtcgcacggtgac
agcgtgacggcgcgggattatatctggaacgcagacggtgaagtcggcggcattaacgac
aaactgcgcggctgccaggtgttcagctatgaccggagcggctggctgaccggtcgcacc
gggcagatgtacgaccacgaccattattattacgacagggccggaaacctgctggcggat
gagtaccagaatgcggtgacggacaatcgcctgccgggctacgggcgcgaccgttacggt
tataacgaatggggtgaactgactgaccgccgtgaccagcagctggcgtggaacgcgcag
ggccagttaacgcgggttatcagcggcaacagcgaaacgcggtatcggtacgatgcgctg
ggcaggcgcatcagcaaggcgacatatgggcgccatacggaccagagggaacagcgacgg
acgacatttgtgtgggaaggattccggctgttacaggagacaacgtggcagggaaagcgg
acgtacctgtacgacgcggaacagccgtacacgccggtagcgagcgtgacgggatgcgga
gaaagccggaaaatcgggtattaccacacggacgtgacgggcacggtgcaggaggtgacc
gcggcggacggcacgctggtgtgggcgggctaccagacgggatttggagagaaccggggc
gacatcagcaacagcggggcgtactttgagcagccgctgcggctgccggggcagtatttt
gacgaagagacggggctgcattacaatctgttcaggtactatgcgccggagtgcggaagg
ttcgtaagccaggatccgatagggctggcggggggaataaatacctatcaatatgcacca
aatccattaagttggatcgatcctcttggtttatcacgatatcctggtgttgatttctct
ggaactgatgggctttatcccgggggcgttaatactgtcacaagagaaatgactggaggg
cggtatagtgattttaaatctgctaatgagattgctggctataaaaattccacagggaat
ataacaggaagatcacatccagaagggtatacctggcatcatatgaatgattataatcca
aaaacaaatacgtcaaccatgcaactagtaaaaatagatgcgcatgaagctacgtaccca
cactctggttctgttagccaatttgaaaaatatcatggtgttaaatatgaaaatgctgaa
gccaagagcatcggcgcaaaatgcggataa
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