Citrobacter farmeri: CI104_08295
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Entry
CI104_08295 CDS
T05012
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cfar
Citrobacter farmeri
Pathway
cfar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CI104_08295 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_08295 (uvrB)
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CI104_08295 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CI104_08295 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
UB2H
AAA_30
IF2_N
DUF4686
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AST79082
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All DBs
Position
1684980..1687001
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AA seq
673 aa
AA seq
DB search
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ
YTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQVESTISR
YTIYPKTHYVTPRERIVQAMEEIKVELADRRKVLLANDKLLEEQRLSQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD
PVIEVRPVATQVDDLLSEIRKRAQINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITASMAKAISETERRREKQQQYNEEHGIIPQGLNKKVVDILALG
QNIAKTRAKGRGKSRSSAASDVVELDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRD
QLHQLRELFIAAS
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaccgttcaaactgaattccgcatttaaaccttccggcgatcagcctgaggca
atacgacgcctggaagagggactggaggacggcctggcgcaccagacgctgcttggcgta
acggggtcagggaaaacgttcactatcgccaatgtgattgccgatctacagcgcccgacg
atggtgctggcacccaacaaaacgctggcggcgcagctgtatggcgaaatgaaagagttt
ttcccggataacgccgtcgagtatttcgtctcttactacgactattatcagccggaagcg
tacgttcccagctctgataccttcatcgaaaaggatgcgtcggtgaacgaacacattgag
caaatgcgtttgtctgccaccaaagcattgctggagcgccgtgacgtgatcgtcgtggcg
tccgtttctgctatctatggtctgggcgacccggatttgtatctgaagatgatgctgcat
ttgacggtgggcatgattatcgatcagcgcgccattttgcgtcgactggccgaactgcaa
tatacccgtaacgatcaggctttccagcgcgggactttccgcgtgcgcggtgaggtgatc
gatatcttcccggcggaatccgacgatattgcactgcgcgttgaactgtttgacgaagag
gtggagcgtctgtcgctgtttgatccgctgaccgggcaggtggaatccaccatttcgcgc
tacaccatctaccctaaaacgcactacgtgaccccgcgtgaacgcattgtacaagcgatg
gaagagatcaaagtcgaactggccgatcgtcgcaaagtcctgctcgccaatgacaaactg
ctggaagagcagcgtctgagccaacgtactcagtttgatctggagatgatgaacgagctg
ggctactgctcagggattgaaaactactcgcgctttctgtcaggacgcgggccgggtgag
ccaccgccgacgttgtttgactatttgcccgccgacggtttgttggtggtggatgagtcc
cacgtgactatcccgcagattggcgggatgtatcgtggcgaccgcgcgcgtaaagagacg
ctggtggagtatggtttccgtctgccgtcggcgctggataaccgcccgttaaagttcgaa
gagtttgaagcgcttgcaccgcaaacgatctatgtttctgcgacgccgggcaattatgag
ctggagaaatcaggcggcgatgtggttgatcaggtcgtgcgcccgacagggttgctggat
ccggtgattgaagtacgtccggtagcaacgcaggtagacgatctgctctctgagatccgc
aaacgtgcgcagatcaacgaacgtgtcctggtaaccacgctgactaaacggatggcggaa
gatctcaccgagtatctggaagaacacggcgagcgggtgcgctatctgcactcggacatc
gacaccgtagagcgtatggaaatcattcgtgacctgcgtctgggcgagtttgatgtgctg
gtggggatcaacctgttgcgtgaaggtctcgacatgccggaggtgtcgctggtggcgatt
ctcgatgctgacaaggaagggttcctgcgttccgaacgttcgctgattcagaccattggt
cgtgcggcgcgtaacattaacggcaaagcgattctctacggcgacaaaattacggcctca
atggcgaaggcgattagcgaaaccgaacgccgtcgcgagaaacagcagcagtacaacgaa
gagcacggcattatcccgcagggcctgaataaaaaagtggtcgatattctggcgctgggg
cagaacattgcgaaaaccagggcgaagggcagaggcaagtcgcgttcctcggcggcgtcg
gatgtggtcgaactggacatgacgccaaaagcgctgcagcagaaaattcacgagctggaa
gggcagatgatgcagcatgcgcagaacctggagttcgaagaggccgcgcagattcgcgat
caactgcatcagctgcgtgaactgtttatcgcggcttcgtga
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