Citrobacter farmeri: CI104_08380
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Entry
CI104_08380 CDS
T05012
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI104_08380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfar03019
]
CI104_08380
Enzymes [BR:
cfar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CI104_08380
Messenger RNA biogenesis [BR:
cfar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI104_08380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
DUF6482
Pinin_SDK_N
Motif
Other DBs
NCBI-ProteinID:
AST79097
UniProt:
A0A8H9NWT3
LinkDB
All DBs
Position
1701257..1702621
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AA seq
454 aa
AA seq
DB search
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITKQPHGKARRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRSGGGRGRGQGQGAGRAQQPRRQDGGA
PKAGAKPSRRTGDAKPAGEKPRPPRRPRRITPVQ
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctgggtttaaatcctgatattctgcgcgccattgccgagcagggt
taccgtgaacctaccccaattcagcagcaggccatccctgcggtgctggaaggtcgcgac
ctgatggcaagtgcgcagaccggtaccggtaaaacggcgggctttacgctgccgctgtta
cagcaccttattactaagcagccgcacggcaaagcacgtcgcccggtacgggcgctgatc
ctgacgccgacgcgtgaactggcggcgcagattggcgaaaacgtccgtgattacagcaag
tatctgaatatccgttcgctggtggtttttggtggcgtgagcattaacccgcagatgatg
aaactgcgcggtggcgtcgatgtgctggtggcaacgccgggccgcttgctggatctggaa
caccagaacgcggtgaaactggatcagattgagattctggtgctggatgaagcggaccgt
atgctggatatgggctttattcacgatattcgccgtgtattagcgaaactgccggcgaag
cgtcaaaacctgctgttctctgcgacattctctgatgagatcaaggcgctggccgaaaag
ctgctgcataacccactggaaatagaagtggcacgccgcaacacggcttcagagcaggtt
acgcagcacgtgcatttcgtcgataagaaacgcaaacgcgagctgttatcgcagatgatc
ggccaggggaactggcagcaggtgctggtgtttacccggactaaacacggcgccaaccac
ctggcggaacaactgaacaaagatggcattcgcagtgcggcgatccacggcaacaagagc
cagggagcgcgtacccgtgcactggctgattttaaatccggtgacattcgcgtgctggtg
gcaacggatattgctgcgcgtggtctggatattgaagaactgccgcacgtggtcaactac
gagctgccgaatgttccggaagattatgtgcatcgtatcggccgtaccgggcgtgctgcg
gcgaccggtgaagcgctgtcgctggtttgtgttgatgagcacaaactgctgcgtgatatc
gaaaaattgctgaaaaaagagattccgcgtattacaacgccaggctatgagccggacccg
tcgattaaagctgagccgatccagaatggtcgccagcagcgtagtggcggtggtcgaggc
cgtgggcaagggcagggcgcggggcgcgcacagcagccgcgtcgtcaggacggtggcgcg
ccaaaagccggcgctaaaccttcacgccgcacaggcgatgcgaaaccggctggcgaaaag
ccacgtccgccgcgccgtccacgcagaattacgccagtacaataa
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