Citrobacter farmeri: CI104_14035
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Entry
CI104_14035 CDS
T05012
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cfar
Citrobacter farmeri
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfar03016
]
CI104_14035
Enzymes [BR:
cfar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CI104_14035
Transfer RNA biogenesis [BR:
cfar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CI104_14035
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
AST80115
UniProt:
A0A8H9NVK6
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All DBs
Position
2822205..2824139
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
IAVIHTEKDRESAEPEELVEPFLTRFVGKVQGKNDRLSIVPDHPLLKDAIPCRAARGVDH
EFKEGDWAVAEMRRHPLKGDRTFYAELTQFITFADDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLERQDLTALNFVTIDSASTEDMDDALYAEELTDGKLQLTVAIADPTAWIAEGSK
LDHAAKIRAFTNYLPGFNISMLPRELSDDLCSLRAHEVRPVLACRMTIAADGTIEDDITF
FAATIESKAKLAYDNVSDWLENSGSWQPESDEIAQQIRLLQRICLSRGEWRHHHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDKLGFGIYNVHLGFD
PANADALAALLQSHGMHVDAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSFAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGESISRPQEEVTVQMAERRRLNRM
AERDVGDWLYARFLSDKAGTDTRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQENGTIQIKGEAVYKVTDVIDVTIAEVRMETRSIIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggacaacccgctgctagcgcagcttaaacagcaactgcattcccagacgccg
cgtgccgaaggggtggtaaaagccacggaaaaaggctttggcttcctggaagtcgatgcg
caaaaaagttatttcatcccaccgccgcagatgaaaaaagtgatgcatggcgaccgtatc
atcgccgttatccacactgaaaaagatcgtgaatctgcggagccggaagaactggttgag
ccgttcctgacccgatttgtcggtaaagtgcagggtaagaacgatcgcctgtccatcgtg
ccggatcatccgctgttgaaagacgctatcccctgccgcgccgcgcgcggtgtggaccat
gaatttaaagagggtgactgggccgttgctgaaatgcgtcgtcatccacttaaaggcgac
cgcactttctacgccgaactaacccagttcatcactttcgctgacgaccacttcgtgccg
tggtgggtcaccctggcgcgacacaatcttgaaaaagaagcgccggacggcgtggcgaca
gaaatgctggatgaaggtctggaacgccaggatcttactgcactgaattttgtcaccatc
gacagtgccagcactgaagatatggacgatgcgctgtatgccgaagaactgaccgacggc
aagctgcaactgaccgtggcgattgccgatcctactgcctggatcgccgaaggcagtaag
ctcgatcacgccgcgaaaatccgtgcgttcaccaactatctgccgggtttcaatatttcg
atgctgccgcgcgaactgtctgacgacctctgctcactgcgcgcccatgaagtgcgcccg
gtgcttgcctgtcgcatgaccatagccgcagatggcaccattgaagatgacatcacgttt
ttcgccgcgacgattgagtcaaaagcaaaactggcttacgacaacgtctctgactggttg
gaaaatagcggtagctggcagcctgagagcgatgaaatcgcccagcagattcgtctgctg
cagcgtatctgcctgagccgcggcgagtggcgtcaccaccatgcgctggtatttaaagat
cgccctgactaccgttttattctcggcgaaaaaggcgaagtgctcgatatcgttgcggaa
ccgcggcggatcgcgaaccggattgtcgaagagtcaatgattgccgccaacatctgcgcc
gcacgcgtactgcgcgacaagctcggctttggcatttacaacgttcaccttggctttgat
ccggctaatgctgatgcgctggccgcgctgctgcaatcccacgggatgcatgtggacgcc
gaagaggtattgaccctggagggcttctgtaaactgcgtcgtgaactggatgcacagccg
tcgggattcctcgacagccgtattcgtcgcttccagtcctttgcggaaatcagcactgag
ccaggtccgcactttggtctgggcctggaggcttacgccacctggacttcaccgattcgt
aaatatggcgatatgatcaaccatcgcctgctgaaagccgtcatcaaaggcgaaagcatt
agccgtccgcaggaagaggtaaccgtgcagatggcagaacgccgtcgcctgaaccgtatg
gcagaacgcgatgttggtgactggctgtacgcccgtttcctgagcgataaggccggtacg
gatacccgcttcgcggcggagattatcgatgtcagccgtggcgggatgcgtgtacgtctg
gtggataacggcgcggttgctttcatccctgccccattcctgcacgccgtgcgcgacgaa
ctggtttgcagccaggagaacggcaccatccagattaagggtgaagccgtttataaagtg
actgatgtgattgatgtcaccatcgccgaagtccggatggaaacccgcagcatcatcgcc
cgtccggcagcctga
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