Citrobacter farmeri: CI104_14105
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Entry
CI104_14105 CDS
T05012
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfar
Citrobacter farmeri
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfar03032
]
CI104_14105 (topA)
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_14105 (topA)
Enzymes [BR:
cfar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CI104_14105 (topA)
DNA replication proteins [BR:
cfar03032
]
Prokaryotic type
DNA Topoisomerases
CI104_14105 (topA)
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CI104_14105 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AST80128
LinkDB
All DBs
Position
complement(2837597..2840194)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDANTTTPSGDALPLQVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYIGDNFGKKYLPESPNQYASKEN
SQEAHEAIRPSDVSVLAETLKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDALSLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMENSLDQVANHEAEWKGVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELFRFRDRLPEKLRYLADAPQQDPEGNKTLVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggttaagtccagcgttggtcatatccgtgatttgccgaccagt
ggctcagcagctaaaaagagcgccgactctacctccaccaaaacggctaaaaaacccaaa
aaggatgaacgtggcgcgctcgtcaaccgtatgggggttgacccgtggcacaactgggac
gcgcactatgaggtgctgccgggtaaagagaaggtcgtctctgaactgaaacaactggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgca
tggcacctgcgggaagtgatcggtggtgatgacacgcggtacagtcgcgtggtgtttaac
gaaattacgaagaatgcgattcgtcaggcatttgaaaagccgggcgaactgaacattgat
cgggttaatgctcagcaggcgcgtcgctttatggaccgcgtggtgggctatatggtctcg
ccgctgttgtggaaaaagattgcccgtggcctgtcagcaggccgtgtacagtccgtggcg
gtgcgtctggtcgttgagcgtgaacgcgaaattaaagcgtttgttccggaagagttctgg
gaaattgacgccaacaccaccacgccttccggcgatgcgttgcccttacaggtaacccac
cagaacgacaaaccgttccgtccggtgaatcgcgagcagacgcttgcggcggtaagcctg
ctggagaaagcacgctacagtgttctggaacgtgaagacaagccgaccagcagcaagccg
ggcgcgccgtttatcacctccacgctgcaacaggcagccagtacgcgtctcggttttggc
gtgaaaaaaaccatgatgatggcgcagcgtctgtatgaagcgggctacatcacttatatg
cgtaccgactcaaccaacctgagtcaggatgccgtaaacatggtgcgtggctatattggc
gataatttcggtaagaaatacctgccggaaagtccgaatcagtacgccagtaaagagaac
tcacaggaagcgcacgaagcgattcgtccttctgatgtctccgtgctggcggaaacgctg
aaggatatggaagccgacgcacagaaattgtatcagttgatctggcgtcagtttgtcgcc
tgtcagatgaccccggcgcagtacgattccaccacgctgaccgttggcgcgggtgatttc
cgtctgaaggcgcgcggtcgtattcttcgcttcgacggctggacgaaagtcatgcccgcg
ctgcgtaaaggtgacgaagaccggacgctgccggcagtcaataaaggtgatgcgctgtcc
ctggttgaactgaccccggctcagcacttcaccaaaccgccagcgcgcttcagcgaagcc
tcgctggtaaaagagctggaaaaacgcggaattggccgtccgtcgacctatgcgtcgatc
atttcgaccattcaggatcgtggctatgtgcgcgtggaaaaccgccgcttctatgcggaa
aaaatgggtgaaattgtcaccgaccgcctggaagagaatttccgcgagctgatgaactat
gatttcaccgcgcagatggaaaatagcctcgaccaggtcgcgaatcacgaagctgaatgg
aagggcgtgctcgacaacttcttcagtgattttactcagcaactggacaaagccgagaag
gatccggaagagggcggaatgcgtccgaaccagatggtgttgaccagcatcgactgccca
acctgcgggcgtaaaatgggaattcgtaccgccagtaccggcgtgttcctcggttgctcc
ggttatgcgctgtcgccgaaagagcgctgcaagaccaccattaacctggtgccggaaaac
gaagtcctgaacgtgctggaaggagatgacgcggaaaccaacgccctgcgcgccaaacgt
cgttgccagaaatgcggtacggcaatggacagctacctgatcgatccgaagcgcaagctg
cacgtctgtggtaataacccgacctgcgacggctatgagatcgaagagggtgaattccgt
atcaaagggtatgacggtccgatcgttgagtgcgaaaaatgtggttctgagatgcacctg
aagatggggcgtttcggtaagtacatggcctgcaccaacgacgagtgtaaaaacacgcgt
aagatcctgcgaaacggtgaagttgcaccgccgaaagaggatccggttccgctgccagaa
ttgccatgtgaaaaatcggatgcttattttgtgttgcgtgatggtgcagccggcgtcttc
ctggccgccaataccttcccgaaatcccgtgaaacacgtgcgccgttggtggaagagtta
ttccgtttccgtgaccgtctgccggagaaactgcggtatctggccgatgcgcctcagcag
gatccggaaggcaataaaacgctggtgcgttttagccgtaagactaagcagcaatatgtc
gccgctgaaaaggacgggaaagccaccggctggtctgccttctttgttgacggtaaatgg
gtcgaaggcaagaagtaa
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