Citrobacter farmeri: CI104_15060
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Entry
CI104_15060 CDS
T05012
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
cfar
Citrobacter farmeri
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfar03016
]
CI104_15060
Enzymes [BR:
cfar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CI104_15060
Transfer RNA biogenesis [BR:
cfar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CI104_15060
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AST80299
UniProt:
A0A8H9NSK9
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Position
complement(3016808..3017935)
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AA seq
375 aa
AA seq
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MNYQMITTDDALATLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHVALIDPHGI
SDWSPLKAILRDTAITKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCGRPLSWGFAS
MVEEYTGVALDKSESRTDWLARPLTERQCEYAAADVWYLLPIAGKLMAETEAAGWLSAAL
DECRLMQTRRQEILAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR
EEHLWSVARYMPGSMGELDSLGLSGSEIRFHGKTLLSLVAKAQALPEEALPEPLLNLMDM
PGYRKAFKAIKALVTEVSAEHNVSAELLASRRQINQLLNWHWKLKPQSMEPELISGWRAA
LMATKLNALLAEYPL
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
ttgaattaccaaatgatcaccactgacgacgcgctggcgaccctgtgcgaagcggtccgt
gcgtttcctgcaattgctctggatactgagtttgttcgtacccgtacctattatccgcag
ttgggcctgatccaactgtttgacggcgaacatgtcgcactgatcgatccgcacggtatt
agcgactggtcgccgctgaaggcaattctgcgcgataccgccatcaccaagtttctgcat
gcgggcagtgaagatctggaagtctttctgaatgcgttcggcgagctgccgcaaccgctg
attgatacgcaaatcctggcggcattttgcggccgtccgctgtcgtgggggtttgcatcg
atggtggaagaatacactggcgtggcgctggacaagagcgagtcgcgtactgactggctg
gcgcggccgctaactgagcgccagtgcgaatacgccgcggcggacgtctggtatctgtta
ccaatagccggaaaactgatggcggaaaccgaggcggcgggctggttgtctgcagcactg
gatgagtgtcgcctgatgcaaacccgtcgtcaggagatcctggcacccgaggatgcctgg
cgcgacatcaccaacgcctggcagctacgtacgcgccaactggcttgtctgcaactgctc
gccgactggcgtttgcgtaaagcgcgtgagcgcgatctggcggttaactttgtggttcgc
gaagagcatctgtggtccgtggcgcgctatatgcccggcagcatgggcgaactcgacagc
ctggggctttctggcagtgaaattcgcttccacggcaagacgctgctttcactggtagcc
aaagcgcaggcgttaccggaagaagccctgccggaaccactgctgaatctgatggatatg
ccaggttatcgcaaagcgtttaaggcgattaaggcgctggtaacggaagtgagcgcagaa
cataacgtcagcgcagagctgctggcgtcgcgtcgtcagatcaaccaactgctcaactgg
cactggaagttaaagccgcagagtatggagcctgaattgatttctggctggcgggcggcg
ttgatggcgacgaaactcaacgcgctactggcagagtatccgctttaa
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