Citrobacter farmeri: CI104_21870
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Entry
CI104_21870 CDS
T05012
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI104_21870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfar03019
]
CI104_21870
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_21870
Enzymes [BR:
cfar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CI104_21870
Messenger RNA biogenesis [BR:
cfar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI104_21870
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CI104_21870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF7452
Motif
Other DBs
NCBI-ProteinID:
AST81548
LinkDB
All DBs
Position
4407090..4409570
Genome browser
AA seq
826 aa
AA seq
DB search
MEEEWSRLQQALTTCFSQGVTFKDGIENQFLNRLIQIITDASAGHGDIFAGYADALRAAH
ASGISAPWLPLPPELTDAPAPEWGMTKSPAAQQIQLAEEADLALTRATYQRKIRRNLLRP
ETDPALKRLLPEEPWLTHYQGFGQQAAIRTLLTSDNNCTLLVNLPTSCGKSLLTQLQALS
APTNTLTLVIVPTVALAIEQADDMQKLLRGTDQDHGGSYAWIGGQDQPSRQAIKERIKAG
TQRVLFCSPESVRSSLVPVLFELSRLNMIGAIVIDEAHLIDQWGAEFRPDFQLIAPMIRS
LKALGKCRFRTLLLSATYSKSTRDILVEQFHDENSELIEVSANFLRPEPEYFVHHEANEN
AHRQRVEQLLMTLPRPLILYCTTRTDAEMWSARLNELGYWRTGMFHGQIDTNNRKKLISK
WKNDQLDIMVATSAFGVGMNKKEIRSIIHAAIPENIDRYYQDCGRAGRDGRSCQVHLVWH
KAQMKTAKSLAVETLIGVEKGFARWKAMFDDRKKSPIADYMISLNTKPVHIDHQGDKNEA
WNRRTLLLMQRAGLIKLVFADPKIPDDLRDNLDDNNTQLIEWFESYYNHVHIRHCDDAHY
SEAHWNTHVEKIRQSELNNRRAAFTVMEMWLEDPGKPLCKILQKFYEYQSHPPELTCGGC
PGCRQKGKGAFSPTVGTDVQILRSEPKKKALFVGAEKKVYYNENMKLHSLLMELRVTLRS
LITSGEYVFIRADRPVFLQLENNLDSLSHFWSAQKMTAPASDGPEIVIIPNTANAFPDLP
MTRFERIIIAPEHLADPQFPHRTWCASAANALSLDTFIRQLQHVNN
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaatggtcacgcctgcagcaggcgctaaccacctgttttagtcaaggggtc
acctttaaggacggtatcgaaaatcagtttctgaacagactgattcagatcatcaccgat
gcctcggcaggtcatggtgacatttttgccggctacgccgatgcgttacgtgccgctcac
gcaagtggtattagcgcgccgtggctacccctgccgccggaactgaccgacgctccggcg
cctgagtggggcatgacaaagtcgcctgccgcgcaacaaattcaactggctgaagaggcg
gacctggcgctgaccagagccacctatcagcgtaagatccgcaggaacttgctgcgcccc
gagaccgatccggcactgaagcgcctgttacccgaggagccctggctgactcactatcag
ggattcggtcaacaggccgccatccggacgctgctaacgtctgataataactgtacattg
ctggtgaatctgcccaccagttgcggtaaaagtctgctcacccaactccaggcgctcagc
gcaccgacaaacaccctcacgctggtgatcgtccccaccgtcgccctcgcaattgagcag
gctgacgacatgcaaaaactgcttcgcggcaccgaccaagatcatggtggaagttatgct
tggatcggaggacaagatcagccctcgcgtcaggcaattaaggaaagaatcaaagcgggg
acacagcgtgtgctcttctgttccccggaatccgttcgctcttctttggttccggtgctg
tttgagctttccagactgaatatgattggcgcgatcgtcatcgacgaagcgcatttgatc
gatcaatggggcgcagagttccgccctgactttcagctgattgcccctatgattcgctca
ctgaaagccctaggaaaatgccgttttcgtacgctgctgctttcggcgacttacagcaaa
agcacccgggacattctggtcgagcagttccatgatgaaaacagcgaactgattgaagtg
tcagctaatttcctacgcccggagccggaatattttgtgcatcatgaggcaaatgaaaac
gcgcatcgtcagcgggtcgaacagcttctgatgaccttaccccgcccgctgattttgtat
tgcactacccgcacagatgcggaaatgtggtctgcccgtctgaacgaactgggctactgg
cgaaccggcatgttccacggtcaaattgacacaaacaatcgcaagaaattgatttcaaaa
tggaaaaatgaccagctcgatatcatggtcgctacctctgcctttggggtagggatgaat
aaaaaggaaatccgcagcatcattcatgctgccattccggaaaatatcgaccgctattac
caggactgcgggcgtgctgggcgtgacggcagatcctgccaggtgcatctggtatggcat
aaggcgcaaatgaaaacggcaaaatcgctggccgttgagacgctgattggcgtagaaaaa
ggttttgcccgctggaaagcaatgtttgacgatcgtaagaaaagcccgatcgctgactac
atgatttcactgaacaccaagcccgttcatattgatcaccaaggcgataaaaacgaagcc
tggaaccgtcggacattgctgttaatgcaaagagccggactcatcaaactggtctttgct
gatccgaaaattcctgacgacctgcgagataatctggatgacaacaacacgcaactgatt
gaatggttcgaaagctactataaccacgttcatatccgtcactgtgacgatgcgcattat
tcagaagcgcactggaacacccatgtggagaagatccgccagtccgagttgaataaccgc
cgggcagcctttacggtaatggaaatgtggttggaggatcctggcaaaccactgtgtaaa
attctgcagaaattctatgaatatcagagccatcctcccgagttaacctgtggaggttgt
ccgggatgtcgtcagaaagggaaaggagcgttttcgcccaccgtgggcacagatgtacaa
attttacgctccgagccgaagaaaaaagcactcttcgtaggtgcggaaaagaaagtttat
tacaacgaaaatatgaagttacattcgttgttgatggaacttcgtgtgacgttgcggtcg
ctgatcacctctggcgaatacgtgtttattcgtgcagacaggccagtgttcctgcaacta
gagaacaacctggattcgctttcgcatttctggagcgcacagaaaatgacagcacctgca
tcggatggaccagagatcgtgatcatccctaacacggccaatgcgttcccagacctaccc
atgacgcgctttgagcgaattattattgcacctgagcatctcgccgatcctcagttccca
catcgaacatggtgtgcaagcgccgctaatgcgctgtcgctggacacttttatcaggcaa
ctacaacatgtcaataattaa
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