KEGG   Citrobacter farmeri: CI104_21890
Entry
CI104_21890       CDS       T05012                                 
Name
(GenBank) helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
cfar  Citrobacter farmeri
Brite
KEGG Orthology (KO) [BR:cfar00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cfar03400]
    CI104_21890
Enzymes [BR:cfar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CI104_21890
    5.6.2.6  RNA 3'-5' helicase
     CI104_21890
DNA repair and recombination proteins [BR:cfar03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    CI104_21890
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: AST81552
LinkDB
Position
4414484..4418920
AA seq 1478 aa
MSTADLSHLHQALDLLEEREAELLVWGDTDGAFTHADIISLFTRHLPYEDAESLLAELQN
AAMLFSVPTSKGGTRYRTRMAESVYLFRHQRQWFRDQPLQRARTLVADYRFVRRPRNYPK
RELPAQTVLSKWVDVPWMNEIKRKALSRLIGDFSIAGFQERSTERILRAWHFHSHHAHAK
EATGTIVCAGTGSGKTLAFYLPALTSLLNDIQRDNAQRVRTLALYPRKELLKDQFMETWG
KCRELDSQALALAGRKIRIGSFFGDTPFNHQYATKDKDKDMPFDLLRCTTPKCPGQMHWK
AEDIKAKREILRCSHCDHSVDSDEVILTRVSLMKNPPDILFTTTEMLNQHLGNNQTNHLF
GVGIGVTPPPVVLLDEVHTYVGNTGAQTAYLLRRWMQLARSRPHFVGLSATLSDAERFFA
DLVGAHKKHVALIEPKIHEMEDEGAEYLLALRGDPVSQTALLSTTIQTSMLARRILDTKR
KKSRGTWGQKTFVFTDDLDINNRLYHQLCDAEGWRSRGQNLYVAKPPLAAQRLETPQNSH
TLTLAGQNWRIAQDIGHPLDENDRAIVARTSSQDVGVDPRAEVVIATASLEVGFNDPSVG
MVIQHKAPRNVASYLQRKGRAGRSRTMRPWMVAVLSEFGRDRVVYQRYEELINPEIKGQS
LPMGNIHIQKMQAAMATLDWLSMKIPGSNIWSLLNKPQTKRESLDHLDRMFHLITAVIEQ
HAWQQELEKYLFYALRITDEQLQRVLWSPPRSIMMELLPTLKRQLTTQWSRMGQPEADRS
TGRSPLPAFIPSALFSELNLPELEIHLERKFKKREHLPFIQGLKEFAPGRISKRYAVYSD
NEADWLIPNNFVPAMNCVSDVDFEIEQAFGDTWQPECIIEYEGQPPIRVIRPMQVLTRAL
RFEQNLTEKSNSQLYWHTRFNPDDQADPLPIPAGPWTDTLHSITFFTHQNMTPLDVTRYA
THATASLRNKTKQQAHVNFRWVDNGEPVGVGVRQWVDGARLRFTLPPTLLQRLRHDPAIQ
RALRTLYFQHRIKHEPRFEYDTFTADWIYECYLAAVTRELATQSSLADSIAELKTPDGRR
RLTDIADTLFQAENIFENSEDGEDDAESQELQQHLRNLFKETDILEMVDRHSAILTQDLS
DDVDFQDWLQHLLTTTLAGAVKQTSHLLLPDVDERGLVVDTELNDEVLDIWLTESEPGGC
GIITRLEDVFHQDPVSVLNLFMRSFAASDYEQIDYDLFEMLSRLPSSSELQEALNAIRKA
SSHPQRREANAHLRALLKAQGFALSHSFMSVLHTRVLRPGSQASHDAQMLAYLNAWRELE
DKAGYEIALNIFAHTQATQELPDASVIKVFERFCKIQGMLWQRGNAIRQSVLSYYNPFKS
GNNLTERLLLSSLFQQTACSISISENDWLAQLHQAITQHGFAELHIPREARHRIVEVISL
VQVTPIEYFGLHLYPRESAVDYQDGNLVLRIELAEALL
NT seq 4437 nt   +upstreamnt  +downstreamnt
atgtctacggctgatttgtcccacttgcaccaggcgctggacctgctcgaagagcgggaa
gcggaactgctggtctggggggatacggatggcgcatttacccatgccgatatcatctca
ctctttacccggcacctgccctacgaagatgcagagtcgttactggcagaactgcagaat
gctgccatgctcttcagcgtcccgaccagcaaaggggggacgcgctaccgcacgcgtatg
gcggaatcggtctacctgttccgccaccagcgtcaatggttccgcgatcaaccgcttcag
cgagcccggacgcttgtcgccgactaccgtttcgtccgtcgcccgcgcaactatccgaag
cgggaacttccggcgcaaacagtgctgagcaaatgggtcgacgtcccgtggatgaacgag
attaaacgcaaggcgctttcccgactgatcggcgacttttccattgccggctttcaggaa
cgctcaaccgaacgtattttgcgcgcctggcactttcatagtcatcatgctcacgcgaaa
gaagccaccgggaccattgtctgtgccggtacggggagtggtaaaacgctggcgttctat
ctcccggcactcacctcgctcctcaatgatattcagcgcgacaacgcacagcgggtcagg
acgctggcactgtatccgcgtaaagaactgcttaaagatcagttcatggaaacctggggc
aaatgtcgtgaactcgacagtcaggccctagcactggcaggacgcaagatccgtattggt
tcttttttcggtgacaccccgttcaaccatcaatacgcaacgaaagataaagacaaggat
atgccctttgatttactccgttgcaccacgccgaaatgtccggggcaaatgcactggaaa
gcagaagatatcaaagcgaaaagagagattcttcgttgtagccactgcgatcacagcgta
gacagtgacgaagtgatcctaacccgcgtctcgctgatgaaaaacccgcctgacatcctg
tttactaccaccgaaatgctcaatcagcacctcgggaataaccaaacgaatcacctattt
ggcgttggcatcggcgtaacaccgccgccggtagtcctgctggatgaagtacacacctat
gtggggaataccggtgcgcagacagcctatctgctgcgacgctggatgcaacttgcacgc
agccgcccccattttgtcgggctgtcggcaacgctaagtgacgccgaacgtttcttcgcc
gatctggtaggcgcgcataaaaaacatgtggctcttatcgaaccgaagatccacgaaatg
gaagatgaaggggctgaatatctgctggcattacgcggtgatccggtctcgcaaaccgcc
ctgctgtctactactatccagaccagcatgctcgcccggcgtattctggatacgaaaagg
aaaaaatcacgcgggacatgggggcaaaaaaccttcgtcttcaccgacgatctggatatc
aataaccgactttatcatcaactgtgtgacgccgaaggctggcggtcacgtggtcaaaac
ttatacgttgcgaaaccgccgctggccgctcagcgtctggaaacaccgcaaaacagccat
acgctgactctggcaggacagaactggcgtatcgcgcaggatattggtcacccacttgac
gaaaatgaccgggccatcgttgcccgaacgtccagtcaggacgtcggggtcgatcctaga
gcggaagtggtaattgcaaccgcgtcgctggaggtgggctttaacgacccctcagttggc
atggttattcagcataaagcgccacgtaacgttgcctcctatttgcagcgtaaagggcgt
gccggtcgttcaagaactatgcgtccgtggatggtcgcagtcctgtccgaatttggccgc
gaccgcgtcgtttatcaacgctatgaagagctcattaatccagagataaaaggacagtcg
ttgccgatgggcaacattcatatccagaaaatgcaggcggcaatggcgacacttgactgg
ctgagcatgaagatccccggaagtaatatctggtcattgctgaataaaccgcagacaaag
cgagagtctcttgaccatcttgatcgtatgttccacctgattaccgccgtgatcgaacaa
catgcgtggcagcaggagttggaaaagtatctgttctacgcgctgcgcatcactgacgag
caacttcagcgtgtactgtggtcgccgccccgttcgatcatgatggagttgctgccgaca
ttaaaacgacaactcaccacccaatggtcgcggatgggccaaccggaggcagaccgttcg
acgggacgttccccgctgccggcctttattccttcagcgctattcagtgaactcaatctg
ccggaactggagatccatctcgagcggaagttcaagaaacgtgaacatttgccctttatt
cagggtctgaaagagtttgcgccggggcgcatttccaagcgctatgccgtttactccgac
aatgaagcagactggcttatcccgaacaactttgttccggcgatgaattgcgtttcggat
gttgattttgaaattgagcaggctttcggcgatacctggcagcccgagtgtatcattgag
tatgaaggtcagccccctattagggtcattcgcccgatgcaggtgcttacgcgcgcgctg
cgattcgagcaaaatctcaccgagaaaagcaactcgcaactgtactggcatacccggttt
aacccagacgatcaggccgatccgctccccattcctgccggcccgtggacggacaccctc
cactccattacgttctttacccaccagaacatgacacctctcgacgtcacgcgttacgcc
acccacgcaacagcctcattacgcaataaaaccaagcaacaggcgcatgtgaacttcagg
tgggtcgacaatggcgagcctgtcggggttggcgtgcggcagtgggtggatggcgcccgg
ctcagatttacgctgccgcccactctgctgcaacgcctccggcatgacccggccattcag
cgcgcactgcgaacgctctatttccagcatcggatcaaacatgaaccacgcttcgaatat
gacacgttcaccgctgactggatctacgagtgctacctagcggcggttacgcgggaattg
gccacacagtcgtctctggcagactctatcgcggaattaaaaaccccggacggccgacgt
cgactgactgatatcgcggacacactcttccaggcagagaatatctttgaaaatagcgag
gatggtgaagacgacgccgaaagccaggaactgcagcaacatttgcgcaacctgtttaaa
gagaccgacattctggaaatggtggacaggcacagcgcgatcctgactcaggatctcagt
gatgatgtcgattttcaggactggctacagcatctgctgacaacgacccttgccggagcg
gtcaaacaaaccagccacctgttgctgccggatgtcgatgaacgcggtctggtggtggat
accgaactcaacgacgaagtactggacatctggctgaccgaatcagaacccggcggctgt
ggcatcattacccgtctggaagacgtttttcatcaggatccggtctccgtactgaatctg
tttatgcgtagttttgccgccagcgattacgagcagatcgactacgacctgttcgaaatg
ctttcgcggctcccctcttccagcgagctccaggaggccttaaatgcgatacgtaaggcc
agcagccatccgcagcgccgtgaggctaacgcccacctcagagcgctgttgaaggcgcag
ggatttgcactcagtcacagttttatgtcggtgctgcacacacgggtactacgtccgggc
agccaggcatcacatgatgcgcagatgcttgcatatctcaacgcatggcgggaactggaa
gacaaagccggatacgaaatcgctctgaatatttttgcccatacccaagcgacgcaagaa
ctgcctgacgccagtgtgattaaagtttttgagcgcttttgcaaaattcagggaatgctc
tggcagcgcggcaatgccatccgtcagtcggttctcagctattacaatccgtttaagtcc
ggtaacaacctgactgaacgactgctgctaagctcactgtttcaacagacggcgtgcagc
atcagcatcagcgagaacgactggttagcgcagttacatcaagccattacccaacacggc
tttgcagaactgcatatcccgcgcgaggcccgccatcgtattgtggaagtgatctctctg
gtgcaggtgaccccgattgagtactttggtttgcatctttatccccgcgaatccgccgtg
gattatcaggatggcaatctagtgttacgtattgaactggccgaagcgctgctgtaa

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