Citrobacter farmeri: CI104_23480
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Entry
CI104_23480 CDS
T05012
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cfar
Citrobacter farmeri
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfar03016
]
CI104_23480
Enzymes [BR:
cfar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CI104_23480
Transfer RNA biogenesis [BR:
cfar03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CI104_23480
Prokaryotic type
tRNA splicing ligases
CI104_23480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AST81840
UniProt:
A0A8H9NYB5
LinkDB
All DBs
Position
complement(4743495..4744721)
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AA seq
408 aa
AA seq
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MAHNDYALLASQNAAPVKMWTHGVPVEPEARQQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLAGDLPDNLSGLRSAIEQAVPHGRTNTRS
RRDKGAWETPPEEVSTHWGTLAPRFKRLTDKYPSLLKTNNHQHLGTLGTGNHFIEVCLDE
QQRVWVMLHSGSRGVGNAIGNVFITLAQQDMQQHIANLPDRNLAYFQEGSRHYNDYLEAV
EWAQDFARQNREVMMSRVLAALSRIVSKPFITQQEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRTMSRTAAKKRFTVADQIRA
TAHVECRKDSEVIDEIPMAYKDIDAVMAAQSSLVEIVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcacataacgactatgcgctgttggcgtcgcagaacgcggcgccggtaaaaatgtgg
acgcacggcgtcccggtggaacccgaggcgcgccagcaactgctgaatacggcgaaaatg
ccgtttatttttaaacacctggcggtgatgccggatgtgcatctggggaaagggtcgacc
atcggcagcgtgatcccgaccaaaggggcgattattccggcggcggtgggggtggacatc
ggctgcgggatgattgcggtgcgtacctcgctgctggccggcgatctgccggataacctg
agcggactgcggagcgcgattgagcaggctgttccacacggacgtactaatacgcgctcc
cgtcgcgacaaaggcgcgtgggaaacgcccccagaggaggtgagtactcactgggggaca
ctggcgccgcgctttaagcgcctgactgacaagtatccctcgttgctgaaaaccaataac
catcagcatttgggaacattgggaaccggtaaccacttcattgaggtgtgtctggatgag
cagcagcgcgtctgggtgatgttgcacagcggctcgcgtggtgtggggaatgccatcggc
aacgtttttattacgctggcgcagcaggatatgcagcaacatatcgcgaatctcccggac
cgaaatctggcgtattttcaggaggggagtcggcactacaacgactacctggaagcggtg
gaatgggcacaggattttgcccggcaaaaccgggaagtgatgatgtcccgcgtactggcc
gcgctgtcgcgcatcgtgagtaaaccgtttatcacacagcaggaagcggtgaattgccac
cataattacgtgcaaaaagagcgtcactttggtgaagaggtactggtgacgcgtaaaggt
gccgtttccgcccagaagggtcagatggggattattccggggtcgatgggggcgaaaagc
ttcatcgtacgtgggctgggaaatgaagagagcttctgctcctgtagtcatggtgcggga
agaaccatgagccgaacggcggccaaaaaacgttttaccgtggcggaccagatccgcgcg
acggcccacgttgaatgccgtaaagacagcgaggtgatcgatgaaattccgatggcctac
aaagacattgatgccgtgatggcggcgcagtcttcactggtggagatcgtgcatacgctg
cggcaggtagtgtgtgtaaaaggataa
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