Citrobacter farmeri: CI104_24760
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Entry
CI104_24760 CDS
T05012
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CI104_24760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfar03019
]
CI104_24760
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_24760
Enzymes [BR:
cfar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CI104_24760
Messenger RNA biogenesis [BR:
cfar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CI104_24760
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CI104_24760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AST82062
UniProt:
A0A8H9NZ51
LinkDB
All DBs
Position
complement(5019739..5021568)
Genome browser
AA seq
609 aa
AA seq
DB search
MAQAEVLNLEPGAKQVLHETFGYQQFRPGQEEIIDTVVSGRDCLVVMPTGGGKSLCYQIP
ALLLNGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFVAL
TATADETTRLDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNCDICLDPPKQYDGVKDAQIAL
STIGRVDQRFGMGYVVEVIRGANSQRIRELGHDKLKVYGMGREQSHEHWVSVIRQLIHLG
FVTQNIAQHSALQLTDASRPVLRGEVALQLAVPRIVALKPRVMQKSFGGNYDRKLFAKLR
KLRKAIADEENIPPYVVFNDATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKAFMALIR
AHVDGDDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcaggcggaagtgttgaatctggaaccaggtgctaagcaggttttgcatgaaacc
tttggctaccaacagtttcgcccgggtcaggaagagattatcgataccgtcgtttcgggg
cgcgactgccttgtcgtgatgccaaccgggggcggaaaatccctctgctatcaaatccct
gccttattgctcaacggtctgaccgtggtcgtttcgccgctgatctccctgatgaaagat
caggtcgaccaactgctggcgaacggcgtggcggccgcctgtctgaactcgacgcaaacc
cgcgagcagcagcttgaagtgatgacggggtgtcgcaccgggcaaatccgtctgctctat
atcgccccggaacgtctgatgctggataacttccttgagcatctggcgcactggaatccg
gtgttactggccgtggacgaagcgcactgcatctcgcagtgggggcatgacttccgcccg
gaatatgccgcactcggtcagctcagacagcgttttcctgcgctgccattcgtcgcgttg
accgcgacagccgatgaaaccacgcggctggatattgttcgcctgctggggctcaacgat
cccttaatccagatcagcagctttgaccgcccgaacattcgttacatgctgatggagaag
tttaaaccgctcgatcagttgatgcgctatgtgcaggaacagcgcggtaaatccgggatt
atttactgtaacagccgtgcgaaagtggaagacaccgccgcgcgtctgcaaagccggggg
attagcgctgcggcgtaccatgcggggctggagaatcacatccgtgccgacgtgcaggag
aaattccagcgcgacgacctgcaaattgtggtggcgaccgtcgcctttggcatgggcatc
aacaaacccaacgtgcgttttgtggtccatttcgatattccccgcaacattgaatcctac
taccaggagaccggtcgcgccgggcgtgacggcctgcctgcggaggcgatgctgttttac
gatccggcggatatggcgtggctgcgccgctgtctggaagaaaaaccgcagggacagcta
caggatattgaacggcataagctgaacgcaatgggcgcgtttgccgaggcgcaaacctgc
cgtcgtctggtactgcttaactactttggcgaagggcgtcaggagccgtgtggcaactgc
gatatctgtctcgatccgccaaaacagtacgatggtgtgaaggacgcgcagattgcgctc
tcaaccattggtcgggtcgatcagcgtttcgggatggggtacgtagtggaagtgattcgc
ggggctaacagccagcgcattcgcgaactcggccatgacaagctcaaagtgtacggtatg
ggccgcgagcagagccacgagcactgggtgagcgtgatccgccagttgattcacctgggc
ttcgttactcagaatatcgcccagcattccgcgctacagctcaccgacgcttcacgtccg
gtgctgcgcggcgaggtcgctctgcaactcgctgtgccgcgtattgttgccctgaaacca
cgcgtgatgcagaaatccttcggtggtaattacgatcgcaaactgttcgccaaactgcgc
aagctgcgtaaagccattgccgatgaagaaaacatcccgccatacgtcgtctttaacgat
gccacgctgattgagatggcggaacagatgccggtgtccgcaagcgaaatgctcagcgtc
aacggggtggggatgcgcaaactggagcgcttcggcaaagcgtttatggcgctgattcgc
gcccacgtcgatggtgacgacgaagagtag
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