Citrobacter farmeri: CI104_24785
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Entry
CI104_24785 CDS
T05012
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cfar
Citrobacter farmeri
Pathway
cfar03420
Nucleotide excision repair
cfar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CI104_24785
03430 Mismatch repair
CI104_24785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_24785
Enzymes [BR:
cfar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CI104_24785
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CI104_24785
MMR (mismatch excision repair)
Other MMR factors
CI104_24785
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AST82067
UniProt:
A0ACA8DD66
LinkDB
All DBs
Position
complement(5025489..5027651)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAV
TFTNKAAAEMRHRIGQIMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPARQAMWYINGQKDEGLRPHHIQSFGNPIEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWVRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQTIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGVEGEPISLYCAFNELDEARFVVNRIKTWQDNGGALEQCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQASRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETVDMPLHVQ
TDRVIKDSGLRMMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATISRPVSHQRMG
TPMAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagcctcaatgataaacagcgcgaagcggtggccgcg
ccacgtagcaacatgctggttcttgcgggggcggggagtggtaaaacacgcgtgctggta
caccgtatcgcctggctgctgacggtagaaaataattcgccttactcgattatggcggtg
acttttaccaacaaagcggcggcagagatgcgtcaccgcatcggtcagattatgggcacc
agccagggcggcatgtgggtgggtaccttccacggtctggcacatcgactgctgcgcgcg
catcacatggatgcgaatttgccgcaggatttccaaattctcgacagcgaagaccagttg
cgcctgcttaagcgtctgattaaagcgatgaatcttgacgagaagcagtggccggcgcgt
caggcgatgtggtacatcaacgggcaaaaagacgaaggtctgcgcccgcatcatattcag
agtttcggtaacccgattgagcaaacctggcaaaaggtttatcaggcctatcaggaagcg
tgcgatcgtgcggggttggtggatttcgccgaactgctgctgcgcgcgcatgagttgtgg
ctcaacaagccgcatattcttcagcactatcgcgagcgtttcaccaatattctggtggat
gaattccaggataccaacaacattcagtatgcctgggttcgtctgctggccggcgatacc
ggcaaagtgatgatcgtgggtgatgacgaccagtctatctacggctggcgcggcgcgcag
gtagagaacatccagcgcttcctgaacgacttccccggcgcgcaaacgatccgccttgag
cagaactaccgctcaaccagcaatatcctcagcgcggcgaacgccctgatcgagaacaac
aacggacgtctgggtaaaaaactctggaccgatggcgtcgaaggcgagccgatttcgctc
tactgtgcgtttaacgaactggatgaagcgcgctttgttgtcaaccggatcaaaacctgg
caggacaacggcggtgcgcttgagcagtgcgccattctctaccgcagtaacgcccaatcg
cgtgtgctggaagaggcgctgttacaggccagtatgccgtaccgtatctacggtggcatg
cgcttcttcgaacgtcaggaaatcaaagatgccctctcttatctgcgtttgattgcaaac
cgtaatgatgacgctgcctttgaacgtgtggtgaataccccaacgcgcggaattggcgat
cggacgttggacgtggtgcgccaggcgtcgcgcgatcgccagctcacgctgtggcaggcg
tgtcgcgaactgttgcaggaaaaagcgctggccggtcgtgccgccagtgcgctgcaacgt
tttatggaattgatcgacgcgctggcgcaggaaaccgtcgatatgccgctgcatgtgcag
accgaccgggtgattaaagactctggtctgcgcatgatgtacgagcaggaaaaaggcgag
aaaggccagacccgcatcgagaacttagaggaactggtgacggcgacgcgccagttcagc
tacaacgaagaagacgaagacctgatgccgttgcaggcatttctctcccatgcggcgctg
gaagcgggcgaagggcaggcggatacctggcaggatgcggtacagctcatgacgctgcac
tcggcgaaggggctggagttccctcaggtgtttatcgtcgggatggaagagggaatgttc
cccagtcagatgtcgctggatgagggcggacgccttgaagaagagcgccgtctggcctac
gtcggcgtgacccgtgcgatgcaaaaactgacgttaacctatgccgaaacgcgtcgactg
tatggcaaagaggtgtatcaccgtccgtcgcgcttcatcggcgagttgccggaagagtgc
gttgaagaggtgcgtctgcgtgcaacgatcagccgcccggtgagtcatcagcggatgggg
acgccgatggcggagaacgacacaggttataagctgggccagcgtgtgcgccacgcgaag
tttggtgaaggcaccattgtgaatctggaaggcagcggcgaacacagccggttgcaggtg
gccttccagggacagggaatcaaatggctcgtcgccgcgtatgcgaagctggaaacggtc
taa
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