Citrobacter farmeri: CI104_26365
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Entry
CI104_26365 CDS
T05012
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
cfar
Citrobacter farmeri
Pathway
cfar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CI104_26365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfar03400
]
CI104_26365
DNA repair and recombination proteins [BR:
cfar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CI104_26365
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CI104_26365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
DnaJ_CXXCXGXG
AAA_21
AAA_16
nSTAND1
AAA_29
RsgA_GTPase
DUF4350
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AST82576
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All DBs
Position
pAUSMDU8141-1:complement(191454..194105)
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AA seq
883 aa
AA seq
DB search
MSKKLFGAPPTLTDASNSVVVRGAREHNLKEVDVSVPRDALVVFSGVSGSGKSSLAFGTI
YAEAQRRYFESVAPYARRLIDQAGVPDVDAIDGLPPAVALQQQRGTSNARSSVGSVTTLS
SLVRMMYSRAGAYPAEQPMLYAEDFSPNTPQGACPSCHGLGHIYDVTEALMVPDPSLSIR
DRAIASWPPAWHGQNLRDILVTLGYDVDIPWKELSEEERHWILFTEDTPTVPVYPGLSPE
DTRVAVREKMTPGYMGTFTGARRYVLHTFAHTQSALMRKRVSSFMEGKLCPVCHGKRLKP
ESLSVTFAGVDIGEFMQMPLDQLAELLLPISRGDFSTHHAGADTDRDITRRDRTERAGSG
RAVHSVTPDVRRTSALSTEKRLAAQRLTRGVMDRLYQLQKLGLGYLTLDRTTPTLSAGEL
QRLRLATQLSSMLFGVVYVLDEPSAGLHPADSHALYDALENLRDAGNSVFVVEHDLDLMR
RAQWLVDVGPAAGEQGGHILYSGVPEGLKAIAESRTARYLFDEIRPPQSYARQPAGWLKL
QDIHRHNLKGLDACIPLGVLTAVTGISGSGKSSLIAQALPELVLSSLGHEPEDVLSEGSD
AEGPTVTEKTYGTLTGDTGLIKRLVQVDQKPIGRTPRSNLATYTGLFDHIRKLFAGTPAA
KNYHYDAGQFSFNVAKGRCETCEGEGFVSVELLFMPSVYAPCPTCHGARYNPDTLRVRWK
ERNIAEVLQMTVDEACSFFADVEPVARPLRLLGEIGLGYLRLGQPATELSGGEAQRIKLA
TELQRSQRGHTLYVLDEPTTGLHASDADRLLVQLQRLVETGNTVVVIEHDMRAVVQADWV
MDIGPGAGHEGGNLVAEGTPAQVSQVCESRTAPFIARELSRNW
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaactttttggtgcccccccaaccctgacagacgccagtaattctgttgtg
gtacgtggtgccagggagcacaaccttaaagaggtggatgtctctgttccgcgtgatgca
cttgttgtcttttcgggggtctctggttccggtaagtcttcactggcttttggaaccatt
tatgctgaggcgcaacgacgctactttgaatcggttgccccgtatgcgcggcgcctcatt
gatcaagccggtgttccggatgtggatgccattgatggactcccccctgcagttgccctt
caacaacagcgaggaaccagcaatgcacgctcttctgtcggcagtgtgaccaccttatcg
agcctggtgcgcatgatgtattcccgggcgggagcctatccggcagaacaacctatgctc
tatgctgaggatttttctcctaacacgcctcagggagcatgtccatcctgccatggtctc
ggacatatctatgatgtgacagaagcactgatggtacctgatccgtcactcagtatccgg
gacagagccattgcctcctggccacctgcctggcacggacaaaatcttcgcgacattctg
gtgacactgggctatgacgtcgatatcccctggaaagagttatctgaagaagagcgacac
tggatcctgtttactgaagataccccgacggtgccggtctaccccggactcagcccggaa
gacacacgtgtcgcagtcagggaaaaaatgactccgggttatatggggacgtttacaggg
gcgcgacgttatgttctgcatacctttgcacacacccaaagtgcactgatgaggaaacgc
gtctccagttttatggaaggtaaactgtgtcctgtctgccacggaaaaaggcttaaaccg
gaatcattgtcagtcacttttgctggagtggacatcggtgagtttatgcagatgccttta
gaccagctggctgagttgcttcttcctatctcccggggggatttcagtacgcatcatgcc
ggggctgatactgacagggatatcacccgccgggaccggacagaacgcgcaggttccggc
agagcagtccattctgtaacgccggatgtccgccggacctcagcattatcgacagagaaa
cgactggctgctcaacgactgaccagaggtgttatggaccggctgtatcagttgcagaaa
ctgggacttggttatctgacattagacagaacaacgccaacactctccgcaggggaactc
cagcgattgcgtcttgccactcagcttagctccatgttgtttggggtcgtctatgttctc
gatgaaccatcagcaggcctgcaccctgcagacagccatgcactttacgatgctctggag
aacctgcgggatgccggaaactcagtgtttgtcgttgagcatgatcttgacctgatgcga
cgggcgcaatggctggttgatgtgggacccgctgcaggagaacagggcggtcatattctc
tacagtggtgtacctgaaggtctgaaagctattgctgaatccagaacggcgcggtatttg
tttgatgaaatcaggccaccacaatcatacgcccgacagccagcaggatggttaaaatta
caggatattcaccgtcacaacctgaagggactggacgcctgtattcctctgggggtactg
accgctgttacaggtatttcgggttccggaaagtctagtctgattgctcaggccttacct
gagctggtgctttcctcgcttggccatgaaccagaagacgtgttatccgagggcagtgat
gctgagggaccaaccgttactgagaaaacttacggtacgctgacaggcgacaccggactg
atcaaacgtctggtgcaggttgaccagaaaccgataggccggacaccgcgttctaacctg
gcgacatataccggactgtttgaccatattcgtaagctctttgccggaacacctgctgct
aaaaactatcattatgatgccggacagttttctttcaatgtggcaaaaggtcgctgtgaa
acctgtgagggtgaagggttcgtcagcgttgaactcttgtttatgcccagtgtgtatgcc
ccttgtccgacatgtcatggcgcacgctataacccggatacgctcagggttcgctggaag
gagcgaaacattgcggaagtcttgcagatgacagtggatgaagcctgcagcttctttgct
gatgtagaacccgtggcgcgacctctgcgcctgctgggcgaaatcggtctgggatatctg
cgtctgggtcaaccagccactgagttatccggaggagaagctcaacggataaagctggca
accgaactgcaacgtagccaacgtggccatacgctgtatgttctggatgaaccgaccacc
ggactccatgcgtcagacgccgaccgtctgcttgtgcagttgcagcgtcttgttgagaca
gggaataccgtagttgtgattgaacacgatatgcgtgcagtcgtgcaggctgactgggtt
atggacattggtcccggagcaggtcatgagggaggcaacctggttgcagaaggtacaccc
gcccaggtatcacaggtttgtgaaagccgcacggcaccgtttattgcccgggagttgtca
cggaactggtaa
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