Coprobacter fastidiosus: Cfast33896_01750
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Entry
Cfast33896_01750 CDS
T09127
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cfas
Coprobacter fastidiosus
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfas03009
]
Cfast33896_01750 (rlmD)
Enzymes [BR:
cfas01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Cfast33896_01750 (rlmD)
Ribosome biogenesis [BR:
cfas03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Cfast33896_01750 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_25
N6_N4_Mtase
MTS
Cons_hypoth95
PrmA
UPF0020
PCMT
Motif
Other DBs
NCBI-ProteinID:
BEG61220
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All DBs
Position
238759..240213
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AA seq
484 aa
AA seq
DB search
MLNFDQICFCFKSTILARKKKELPVIEQVEITDVAAEGKAIARIDDLVVFVPFAAPGDIV
DLQLYRKKHRYAEGRILKYHKYSEMRVEPFCSHFGVCGGCKWQHIPYEKQIAYKQQQVFD
NLSRIGKIDLPEISAIKGSEKTRFYRNKLEFTFSNKSWLTQEELQSTQTFDSRNALGFHI
PGMFDKVLDIKTCWLQDNISNDIRLAIRKFALDHDYSFFDLREQRGLMRNIIIRTASTGE
VMLIVVFFENDRSKIDAMMEYLAETFPQITSLLYIINQKANDTITDQEVHVFKGRDYILE
SMEGLQFKIGPKSFYQTNSEQAYELYKIARDFAGLTGEELVYDLYTGTGTIANFVACRAR
KVIGIEYVPEAIEDAKVNSELNGISNTLFYAGDMKDILTQDFINEHGRPDVIITDPPRAG
MHDDVIKTILFAEPVKIVYVSCNPATQARDLNLLDEKYRVEKVQPVDMFPHTHHVENVVL
LVKK
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcttaactttgaccaaatttgtttttgttttaaaagtactattttggcacgtaaaaag
aaagagcttcctgttatagaacaggtcgaaattacagatgtggctgctgaaggcaaggcg
atagctcggattgacgatttagtcgtttttgttccgtttgccgctcccggagatattgtc
gatttgcaattatatagaaaaaaacatcgttatgctgaagggcggatattgaagtatcat
aagtattccgaaatgcgtgttgagccattttgttcgcattttggtgtatgtggaggatgc
aagtggcagcatatcccgtatgaaaaacaaatagcatataaacaacagcaggtttttgat
aacctttctcgaatcggaaaaatcgatttaccggaaatttctgcgataaaaggctcggag
aagactcgtttttaccgtaataagctggaatttactttttcgaataagtcttggcttact
caagaagaattgcagtctacacaaacttttgattctcgaaatgctttaggattccatatt
cccggaatgttcgataaggtactggatataaaaacttgctggctgcaggataatatctct
aatgacattcggttggctattcgaaaattcgctcttgatcatgattattctttttttgat
ctgagagagcagcggggattgatgcgtaatatcataattcgtacggcatcaaccggtgag
gttatgttgatcgtcgttttttttgaaaatgataggtctaagattgacgctatgatggaa
tatcttgcggagacctttcctcaaattacttctttattatatataataaaccagaaagct
aatgatacgattaccgaccaagaggttcatgtgttcaaaggtcgggattatatattggag
tcgatggagggattacaattcaaaataggacctaaatctttttatcagaccaattctgaa
caggcgtatgagttatataaaatagctcgagattttgctgggcttaccggagaagaactt
gtttatgacttatatacgggaactgggactattgcaaactttgtggcctgccgtgcccga
aaagtgataggaatagagtatgttccggaagcgattgaagatgcaaaggtaaattctgaa
ttgaatggcatcagtaatacattgttttatgccggagatatgaaggatattcttacacag
gattttataaatgaacatggccgacctgacgttattattaccgatcctccgagagccggg
atgcatgatgatgtcataaagaccattttgtttgccgaacctgtaaaaatcgtttatgtc
agttgtaatcctgcaactcaggcgcgggatctgaatctgttggatgaaaaatatcgtgtc
gaaaaagttcagccggtagatatgtttccacatactcatcatgtagaaaatgtagtattg
ttggtaaaaaaataa
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