Entry |
|
Symbol |
uvrA_1
|
Name |
(GenBank) excinuclease ABC subunit UvrA
|
KO |
K03701 | excinuclease ABC subunit A |
|
Organism |
cfas Coprobacter fastidiosus
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:cfas00001]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cfast33896_03170 (uvrA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:cfas03400]
Cfast33896_03170 (uvrA_1)
DNA repair and recombination proteins [BR:cfas03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cfast33896_03170 (uvrA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cfast33896_03170 (uvrA_1)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(416130..418910)
|
AA seq |
926 aa
MTDNSIFIKGARVNNLKNIDIEIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLS
AYARQFLGRMSKPECDFIKGIPPAIAIEQKVNTRNPRSTVGTSTEIYDYLRLLYARIGKT
ISPISGKEVKKHQTEDIIRCMSNYSEGTRFSVLTILHIPKGRTLETQLEILLKEGYNRVE
YKGKTIRIEELEHTSNIDTSSLFLIIDRMTVSSEKNTISRLTDSAETAFFEGGGECILKF
YTEKGIEEHTFSKRFEADGITFEEPNDLMFSFNSPVGACPTCEGFGKVIGIDENLVIPNK
ALSVFDDAVMCWKGEKMSEWKKNLIRVAEASHFPIHRPYYQLTEREKELLWNGNHLFGGI
HDFFKMLEENQYKIQYRVMLARYRGKTVCPDCKGGRLKPQAQYVKIGGKSISELVALPIT
DLKIFFDTLALDEHDSIVAKRLLTEIKNRIGFLVNVGLGYLTLNRLSSTLSGGESQRINL
ATSLGSSLVGSLYILDEPSIGLHSRDTTLLIKVLRELQALGNTVIVVEHDEEIIRAADYI
IDIGPKAGRLGGEVVYQGDLSKLEKATKSYTVRYLTGEEKIETPAHRRKWNNYIKIEGAA
HNNLKGIDVIFPLHIMTVVTGVSGSGKSSLVRDVFFKSLSRFYEEDGEQPGIFNRLSGDM
HLVKHIEFVDQNPIGKSSRSNPATYLKAFDEIRKLYADQQAAKQMGFTPAYFSFNVEGGR
CEECKGDGTITVEMQFMADITLTCESCHGKRFKQDILEIEYRGKNINDVLEMTINQAIEF
FSEQQGSAEKKIIKRLKPLQDVGLGYIKLGQASSTLSGGENQRVKLAYFLSNEKQEPTIF
VFDEPTTGLHFHDIKTLLKAFDSLIEKGHTVVIIEHNMDVIKCADYVIDMGPEGGDKGGF
LVCAGTPEDIASCEKSYTGKYLKDKL |
NT seq |
2781 nt +upstreamnt +downstreamnt
atgaccgataactcaatatttataaaaggcgctcgggtgaataatctcaaaaacatcgac
attgagataccccgggataaactaattgtaataacaggactctccggttcaggaaagtcg
tctttggcattcgatactttatatgcagaaggacaacgccggtatgtcgaaagcctttct
gcctatgcacggcaatttttaggacgcatgagcaaacctgagtgtgatttcataaaagga
atccctccggcaatcgcaatagaacaaaaagtcaatactcgaaatccccgttccacggta
ggcacttccaccgaaatttacgattacctacggctattatatgctcgtataggaaaaaca
atttctccaatatctgggaaagaggtcaaaaaacatcagacagaagatataatcagatgt
atgtctaattattcggaaggaacacggttctccgttctcacgatattgcatattcccaaa
ggccgaaccttggaaacgcaacttgagattttattaaaagagggatataatcgtgttgaa
tataagggaaaaaccattcggatagaagaattagaacatacatctaacatagacacgtca
tctcttttcttaataatagacagaatgactgtttcctctgaaaaaaatacaataagccga
ttgacagactctgcagaaaccgcattttttgaaggaggaggtgaatgtattcttaaattt
tatactgaaaaaggtatagaagaacatacattctcaaaacgatttgaagccgacggtatc
acttttgaagagccgaacgatctcatgttcagtttcaacagccctgtaggagcatgcccg
acttgtgaaggcttcggtaaggttatcggcatcgacgaaaatttagttattcccaataaa
gcgttatcggtatttgacgatgccgtcatgtgctggaaaggagaaaaaatgagcgaatgg
aaaaagaatttgattcgtgtagccgaagcttctcattttcccatacatcgcccttattat
caacttaccgaacgagaaaaggaacttttgtggaacgggaatcatcttttcgggggaatt
cacgattttttcaaaatgcttgaagaaaatcaatacaaaatccaatacagagtcatgctc
gctcgatatcgaggtaaaactgtttgtcccgattgcaaagggggtcggctaaaacctcaa
gcacaatatgtaaaaatcggaggaaaatctatttcggaattggtcgctttaccaatcaca
gatctaaaaatctttttcgacactttggcattagatgaacatgatagcattgtcgccaaa
agattgctgacagaaataaagaacagaataggttttcttgtaaatgtcggactgggttat
ctgacattgaatcgtctatcttccactctttcaggaggagaaagtcaacggatcaatctt
gcaacatctttaggaagcagtcttgtcggatctctatatattctggatgaacccagtatc
ggattacattcccgtgatacaactttacttataaaagtattaagagaactgcaagctttg
ggaaataccgtaatagtcgtagaacatgacgaagaaataattcgtgcagcagattatatc
atcgacataggacctaaagcaggacgtctcggcggagaggtcgtttatcaaggagacctg
tcgaaacttgaaaaagctacaaaaagctatacggttcggtatcttaccggtgaagaaaaa
atcgaaacgcccgcccaccgaaggaaatggaataactatataaaaatagaaggagctgca
cataataatctcaaagggatagatgtcatatttcctttacatataatgacagtagttacc
ggagtcagcggttcaggaaaatcatcactggtcagagacgtattttttaaatctctttcc
agattttatgaagaagacggggaacaacccggtatattcaaccgactttccggagacatg
catttggtaaaacatatcgaatttgtcgatcaaaatccgatcggtaaatcatcaagatct
aatccggcaacatacctgaaagcttttgatgaaatcagaaaattatatgccgaccagcag
gctgctaaacaaatgggatttaccccggcatacttttcgttcaacgtagaaggcggacgc
tgtgaagagtgtaaaggcgacggaactatcactgttgaaatgcaatttatggcagatatt
actcttacatgtgaaagttgccacgggaaaagatttaaacaagatatacttgaaatcgaa
tatcgaggaaagaatatcaatgatgtattggaaatgactatcaatcaggctatcgaattt
ttttcggaacagcaaggaagcgccgagaaaaaaatcatcaaaagactgaaacctctacaa
gatgtaggattaggatatattaagctcggacaggcttcttcgaccctttcgggtggagaa
aatcaacgggtaaagctcgcttattttttgagcaatgaaaagcaagagcctacgatattc
gtttttgacgaaccgacaacaggattacattttcatgatataaaaacattactaaaagca
ttcgattctttaatagaaaaagggcatacggtcgtaattatcgaacacaatatggacgta
attaaatgtgctgattatgtcatagacatgggtcctgaaggaggagacaaaggcggtttt
cttgtttgtgcaggaactccagaagatattgcgtcttgtgaaaaatcttacaccgggaag
tacttaaaagataaattatga |