Coprobacter fastidiosus: Cfast33896_03980
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Entry
Cfast33896_03980 CDS
T09127
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cfast33896_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfas03019
]
Cfast33896_03980
03400 DNA repair and recombination proteins [BR:
cfas03400
]
Cfast33896_03980
Enzymes [BR:
cfas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cfast33896_03980
Messenger RNA biogenesis [BR:
cfas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cfast33896_03980
DNA repair and recombination proteins [BR:
cfas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cfast33896_03980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BEG61443
LinkDB
All DBs
Position
complement(507762..509819)
Genome browser
AA seq
685 aa
AA seq
DB search
MNILKLDNITYKIEIFQPALIIYIRSRFYYTQNNRQKEKYAITICNFATSNIGMGQNIYE
ILKRYWGYDTFRPLQEDIINSVLTGNDTLGLMPTGGGKSLTFQVPVLAMDGICLVITPLI
ALMKDQVDNLRARDIKAAYLYSGLTRHETIVTLENCIFGKYKFLYISPERLSNDLFLSKV
KAMKVSLLVVDEAHCISQWGYDFRPSYIKIADIRTLFPDVPVLALTATATPQVVEDIQEK
LHFKKGKVFQKSFFRPNLSYVVRYGENKIQQLIHILNRVPGSAIIYVRSRQKTKEIAEEL
RRFKISADFYHAGLKSEDKNRKQQSWKEDHCRVIVATNAFGMGIDKPDVRLVIHLDLPNS
PEEYYQEAGRAGRDGLQAYAVILYANADKVKLEKRIRDMFPEREFISRVYEALGNFLQVA
VGSGMNSVFDFNLNTFCKTFKFPILPTFNALKILEQAQYIEFTEEVESLSRVMITVQRDE
LYKLQTDDYEKEELLQCLLRSYTGLFADYVFIQEDLLSRRSGLSPQEVYENLIYFSKQHI
LHYIPQKRTPFIIYTTPREDLKYLSIPRNVYEERKERFSHRIHSMLEYVLHDKKCRTQIL
LNYFGETFNRECGLCDICLQQKSGELTSGDFSRIEKEIYKLLQADKCSLDTIIARIPFSQ
EKIVETLRFLCDEQFVQVKDGLYYI
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
ttgaatattctcaaactcgataatataacatataaaattgaaatttttcaaccggctttg
ataatatatattcgaagccggttttattatacacaaaataatcgtcaaaaagaaaaatat
gccattacaatttgtaattttgcaacctcgaacataggtatgggacaaaacatctacgaa
atattaaaacgatattggggatatgatacattcagacctttacaagaagatattatcaat
tccgtactgacaggaaatgataccttgggcttgatgccgacaggaggagggaaatcctta
acatttcaagttcctgtcctagctatggatggaatttgtttagttataacacctctgatc
gcattaatgaaagatcaggtggataatcttagagccagagatattaaagcggcttatcta
tattccggattaactcgtcacgaaacgatcgttacattagaaaattgcatattcggtaaa
tataagtttttatacatttctccggaacgtctttcaaacgatcttttcctatccaaagta
aaagcaatgaaagtctctctattagtggtggatgaagcccattgcatctcccaatggggg
tatgatttcagaccttcatatataaaaattgccgacataaggactttattccccgatgtt
cccgtattagccttgactgcaactgcaactccccaagtcgtagaagatatacaagaaaaa
ctccatttcaaaaaaggaaaagtctttcaaaaaagttttttccgccctaatctttcttat
gtagtacgctacggagaaaataaaattcaacaattaatacatattctcaatcgtgttccg
ggaagtgccataatctatgtccgcagcagacaaaaaacaaaagagattgcggaagaatta
agaagattcaaaatcagtgcggatttttatcatgcaggtttaaaatcagaagataaaaac
cgtaagcaacaatcctggaaagaagatcattgtcgggtaattgtcgccacaaatgctttt
ggaatgggcatagataaaccggatgtacgactcgttattcatttggatttacctaactct
ccggaagagtactatcaagaagccggacgcgcaggaagagatgggctccaggcatatgct
gttattttatatgcaaatgccgataaggtaaaattagaaaagagaatccgtgatatgttt
cccgaacgagaatttatatctcgtgtatatgaagcattaggaaactttttgcaagtagca
gtcggatcgggaatgaattctgtttttgatttcaatttaaacacattctgcaaaacgttt
aaatttcccatattaccgacatttaacgcactaaaaatattagaacaagctcaatatata
gagtttacggaagaagtagaatctctgtcgagagtaatgataaccgtacaacgtgatgaa
ttgtacaaattgcaaacggacgattatgaaaaagaagaattattacaatgtttacttcgt
tcctatacaggtttattcgccgattacgtttttattcaggaagatctcttgtcaagacga
agcgggctctcccctcaagaggtatacgaaaacttaatctatttttcaaaacagcatatt
ttacactacataccgcaaaaaaggacaccttttattatatataccacacctcgagaggat
ctgaaatatttatcaataccccgaaatgtttatgaagaacgcaaagaacgtttttctcat
cgcattcatagtatgttggaatatgtacttcacgataaaaaatgcagaacacaaatatta
ttaaactattttggcgagacatttaacagagaatgcggattatgcgatatttgtttgcaa
caaaaatccggagaattaacttctggagatttctcccgaatagaaaaagaaatctacaaa
ctattgcaagctgataaatgtagtctcgacacaattatagcacgtattcctttttcacag
gaaaaaatagtagaaacattacgtttcttatgtgatgaacaatttgttcaagttaaagac
ggactttattatatataa
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