Coprobacter fastidiosus: Cfast33896_06660
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Entry
Cfast33896_06660 CDS
T09127
Symbol
recQ_2
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cfast33896_06660 (recQ_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfas03019
]
Cfast33896_06660 (recQ_2)
03400 DNA repair and recombination proteins [BR:
cfas03400
]
Cfast33896_06660 (recQ_2)
Enzymes [BR:
cfas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cfast33896_06660 (recQ_2)
Messenger RNA biogenesis [BR:
cfas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cfast33896_06660 (recQ_2)
DNA repair and recombination proteins [BR:
cfas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cfast33896_06660 (recQ_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ-1-like_HTH
DEAD
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BEG61711
LinkDB
All DBs
Position
complement(835713..837893)
Genome browser
AA seq
726 aa
AA seq
DB search
MATRTNLIEELKKNFGFDTFKGNQEAIIRNLLDGKDTFVLMPTGGGKSLCYQLPSLLLDG
TAIVISPLIALMKNQVDAMRNFSEEDGVAHFINSSLNKAAIDQVKDDIMAGRTKLLYVAP
ESLTKEENIEFLKQVKISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGSHPLIALTAT
ATPKVQHDIQKNLGMIDAEVFKSSFNRPNLYYEVRPKTQNIDRDIIKYIKSQSGKSGIIY
CLSRKKVEELAETLKVNGINALPYHAGMDSTTRTQNQDAFLLEKVDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYMNKDLQKLEKFMQGKPIAEQEI
GKQLLLETAAYAESSVCRRKLLLHYFGEEYGEENCGNCDNCLNPKKQVEAQDLLCAVLET
VIALKEKFKADHVIDVLLGKETTEVLSYHQEDLEVFGCGQGEEEKTWSAVIRQALIAGYL
DKDIENYGLLKVTKAGHAFLKKPVSFKIVEDNDFDDVEEEVPMKGGATCAVDPTLYAILK
DLRKKIAKKLELPPYVIFQDPSLEAMATTYPVTIEELQNIPGVGAGKAKRYGEEFIKVIK
THCDENEIERPEDLRVRTVANKSKMKVSIIQGIDRKIALDELAESKGLEFTDLLDEVEAI
VYSGTKINIDYFLQEVMDDDHIYDIFEYFKEADSDDLEAAIEELGRDYTEEEIRLVRIKF
LSEMGN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaagaacaaatttgatagaagagttgaagaagaatttcggatttgataccttt
aaaggaaatcaagaggcgataattcggaatttgcttgatggtaaagacacatttgtgctg
atgcctacgggcggaggtaagtctttatgttatcagttgccctcgttattgctcgatggc
acagctattgtcatatcaccccttatcgccttgatgaaaaatcaggtggatgcaatgcgt
aatttcagtgaggaagatggtgtggcgcattttataaactcgtctttgaataaagctgca
atagatcaggtaaaagatgacattatggcgggacgtaccaagttattgtatgtagctccc
gaatctcttaccaaagaagaaaatatagaatttcttaaacaagtaaaaatatcattttat
gctgtggatgaggcgcattgtatttcggaatggggacatgacttcagacctgagtaccgg
cgcatacgtcctataattaatgaaataggttctcatccgttgattgctcttacagcaaca
gcaacgcctaaggtacaacacgatattcaaaaaaatcttgggatgattgatgcggaggtc
tttaaatcttcctttaatcgtcctaatctttattatgaagtgcgtcccaaaacgcaaaac
attgatcgagacattatcaaatatatcaaatcccaatcaggtaagtcgggaattatttat
tgtctgagccggaaaaaagtcgaagaacttgccgaaacattgaaagttaacggtataaat
gcacttccgtaccatgccggtatggactctactactcggactcagaaccaagacgctttt
ttgcttgagaaggtggatgtaatagtagctactatcgcattcggtatgggaattgataaa
cccgatgttcgtttcgttatccattatgatattccgaaaagccttgagggatattatcag
gaaaccggacgtgccggacgagatggcggcgaaggtcagtgtataacgttttatatgaac
aaagatctgcagaaattggagaaatttatgcagggaaaacctattgctgaacaggaaatc
gggaagcagttattgctcgaaacagcagcttatgctgaatcatcggtgtgccgaagaaaa
ttgttgttgcattatttcggggaagaatacggagaagaaaattgtggaaattgtgacaat
tgtttaaaccctaagaaacaagtggaagctcaagatttactttgtgcagttctggaaact
gtaatagctctgaaagaaaaatttaaagccgatcatgtgatcgatgtattattgggaaaa
gaaacgaccgaagtcctttcatatcatcaagaagatcttgaggtgttcggatgcggtcaa
ggtgaagaggaaaaaacgtggagtgcagtaatacgacaggcattgatagccggatatttg
gataaggatattgaaaattacgggctgctgaaagttacgaaagccggacatgcatttctc
aaaaagccggtatcattcaagattgtggaggataacgattttgatgatgttgaggaagaa
gttccgatgaagggaggagctacctgtgccgtagatcctactttatatgctatcttaaaa
gatttgcgtaagaaaatagccaagaaattggagttgcctccttatgttatatttcaggat
ccttcgctcgaagctatggcgacgacttatcccgtaactattgaagaattgcagaatata
ccgggagtcggggctggaaaagccaaacgttacggtgaagaatttattaaagttataaag
acgcattgtgacgaaaacgaaatagaacgtcctgaagatttgcgtgtgagaacggttgcc
aataaatcgaaaatgaaggtttctattattcaaggtatcgaccgtaagatcgcacttgat
gaattggcagagtcgaaaggtcttgaatttaccgatcttcttgacgaagtagaagcaata
gtgtattctggaacaaaaatcaatatcgactatttcttgcaagaagtaatggatgatgac
catatttatgacatatttgaatatttcaaagaagcggacagcgatgatctcgaagcggca
atagaagaattgggtcgtgattatacagaagaagagatacgtctggtacgaattaaattc
ctttccgaaatgggaaactaa
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