Coprobacter fastidiosus: Cfast33896_14750
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Entry
Cfast33896_14750 CDS
T09127
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cfast33896_14750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfas03021
]
Cfast33896_14750 (rpoC)
03400 DNA repair and recombination proteins [BR:
cfas03400
]
Cfast33896_14750 (rpoC)
Enzymes [BR:
cfas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cfast33896_14750 (rpoC)
Transcription machinery [BR:
cfas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cfast33896_14750 (rpoC)
DNA repair and recombination proteins [BR:
cfas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cfast33896_14750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BEG62520
LinkDB
All DBs
Position
complement(1900021..1904286)
Genome browser
AA seq
1421 aa
AA seq
DB search
MAFRKENKIKSNFSKISIGLASPEEILEGSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIQLVVPVAHIWYFRSLPNKI
GYLLGLPTKKLDAIIYYERYVVIQPGVKDDLAVYDLLSEEEYLDILDSLPKENQMLDDTD
PNKFIAKMGAEAIYDLLARLDLDELSYELRHRASTDGSQQRKNEALKRLQVVESFRASKQ
RNRPEWMILKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEV
ILRNEKRMLQEAVDSLLDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDYS
ARSVIVVGPELKMHECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKEPVVWD
ILEHVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAVHL
PLGNEAILEAQMLMLGAHNILNPANGAPITVPSQDMVLGLYYITKLRPGSLGEGLVFYGP
EEAEIAYNEGKVSLHAPVKVVVKDLDENGNIVDILRETSVGRVLVNEKVPVEVGYINEIL
TKKSLRGIIGKVIKVCGVVRAAQFLDDIKNLGYQMAFKGGLSFNLADVIIPPEKEALVNE
GYANVEQIMANYNMGFITYNERYNQIIDTWTHVNSKLSDILMKQLTNDNQGFNSVFMMLD
SGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILANFKEGLSVLEYFISTHGARK
GLADTALKTADAGYLTRRLVDVAHDVIIHEEDCGTLRGLVCTELKNNEETVASLEERILG
RVSVHDIQHPLTGEILVHAGEEITEDIAKKISDSPIERVEIRSVLTCESKKGVCAKCYGR
NLATNRLVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGIASNIAAVSNVTSRYDGILEID
ELRTVDSIDETGKKVMIVVGRLAEMRIIDPNTKIVLTTTNIPYGSKLYFNSGDTLKKGDV
VCEWDPFNAVIVSEATGKVKFDNVIEGVTYKVESDEQTGLREKIIIESKDRTRVPSALIL
DEKGDVIRSYSLPMGAHLMVDEGQEIKSGDVFVKIPRAVGKAGDITGGLPRVTELFEARN
PSNPAVVSEIDGEVNFGKVKRGNREISVTSKTGQVKKYLVPLSKQILVQENDYVRAGTPL
SDGAITPSDILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVMVIDPG
DTRFLEQQIIDKHEFMEENDRIWGKKVVIDAGDSQTMKPGQIVTARKLRDENSALKRRDL
HLVEVRDAVPATSEQILQGITRAALQTSSFMSAASFQETTKVLNEAAINGKVDKLEGMKE
NVICGHLIPAGTGQREFDKLVVGSKEEFDRVFANRKNVTDF
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagaaaagagaacaagataaagagtaacttttcgaagatttccataggtttg
gcttctccggaagaaattcttgaagggtcgagcggtgaagtcctgaaaccagaaaccatc
aattaccgtacatataaacctgagcgggacggtttgttctgtgaacgtatattcggaccg
gtaaaagattatgaatgtcattgtggaaaatataaacgtatacgttacaagggcattgtt
tgtgatcgttgtggtgtagaagttacggaaaagaaagtacgccgtgagcgtatggggcat
attcaattggtcgttcctgtcgctcatatttggtatttccgctctttacccaataagatc
gggtatttgctcgggttgccgactaaaaagttagatgcaattatatattatgaacggtat
gttgtgatacaaccgggagtaaaagacgatttagctgtgtatgatttgctctcggaagaa
gaatatttggatattctggattctcttcctaaagaaaatcagatgttggatgatacagat
cccaataagttcattgcgaaaatgggagctgaggctatctatgatcttttggcacgtttg
gatttggacgagctttcgtatgaattgcgtcatcgtgccagcacagatggttctcaacag
cgtaaaaacgaagcactgaaacgtcttcaagttgtagagtctttccgggcttcaaaacag
cgtaatcgtcctgaatggatgattctgaaagtcgttccggttattccgccagaattgcgt
cctcttgttcctttggatggaggtcgttttgcgacttcagatttgaatgatctttatcgt
cgtgtaatcatccgcaacaatcgtttgaaacgtttgatggagattaaagctcccgaagtg
attttacgaaacgaaaaacgtatgcttcaggaggcggtggactctttattggataattcc
cgtaagtcgagtgctgtaaaaaccgatgccaatcgtccgttgaaatctctttctgacagt
ttaaaagggaagcaagggcgtttccgtcagaatttgttgggaaaacgtgtcgattattct
gcgcgttcggtaattgttgtcggacctgaattgaaaatgcacgagtgcggtcttccgaag
gatatggctgcggaactttacaagccgtttgttattcggaaactgattgaacgcggtatt
gtcaagaccgttaaatctgctaaaaaaatcgttgaccgaaaagaacctgtcgtatgggat
attttggaacatgtgatgaaaggtcatcccgtattgttgaaccgtgctccgacattgcac
cgcttaggtattcaggcttttcagccgaaaatgatcgagggaaaggctattcaattgcat
ccattggcatgtacggcatttaacgccgacttcgacggtgaccagatggccgtccattta
cctttgggaaatgaagctattctggaggctcaaatgttaatgttgggtgctcataatatt
cttaatcctgcaaatggagctcctattacagtgccgtctcaggatatggtgctcgggttg
tattatattacaaaacttcgtccgggttctttgggtgaaggtttggtattttatggaccg
gaagaggccgagatagcgtataatgaaggaaaagtttcccttcacgctcctgtaaaagtc
gtagtaaaagatttggatgaaaacgggaatattgtagatatacttcgtgagacttctgtg
ggtcgggttttagtaaatgagaaagtgcctgtagaagtcggatatattaatgaaattctg
acaaagaaatctttacgtggtattatcggtaaagtaattaaagtttgcggtgttgttcgt
gcagctcaattccttgatgatattaagaatttaggatatcagatggctttcaaaggaggt
ttgtcctttaaccttgccgatgtgattattccgccagaaaaagaagccttggttaatgaa
gggtatgctaacgtagagcagatcatggcgaattataacatgggtttcatcacttataat
gaacgttacaatcagattatcgatacatggactcatgtcaattcgaaattgtcggatatt
ctgatgaaacaattgacaaatgataatcagggatttaactctgtattcatgatgttggat
tctggagctcgtggttctaaagaacaaattcgtcagctttccggtatgcgtggtttgatg
gcaaaacctcaaaaatcgggagcagaaggcggacagattatcgagaaccctattttggcg
aactttaaggagggattatctgtattggaatattttatttccactcacggtgctcgtaaa
ggtcttgctgatacggctttgaaaacagcagatgccggatacttgacccgtcgtttggtc
gatgtagctcatgacgtaattattcatgaagaagattgcggtacgttaagaggacttgta
tgtactgaattgaagaataatgaagaaaccgtcgcctctttggaagaacgtattttggga
cgtgtttcggtacatgatattcaacatccgttaactggagagattttggttcatgccggt
gaagagataaccgaggatattgctaagaaaataagtgattcaccgattgaacgtgtagaa
attcgttcggtattgacttgcgaatcgaaaaagggcgtttgtgctaaatgttacggacgt
aatttggctacaaatcgtttggttcaaaaaggtgaagctgtaggtgtgattgctgctcag
tctattggtgaaccgggaacacagttgacattgcgtacattccatgtgggaggtattgca
tccaatattgcagcagtatcgaatgttacttcacgttatgacggtattctcgaaatagat
gaacttcgtacggtggatagtattgacgaaaccggaaagaaagtgatgattgtagtaggc
cgtttggctgaaatgcgtatcattgatccaaatacgaaaatcgtgttgacgacaacaaat
attccttacggctctaagctttactttaatagtggggatactcttaaaaaaggagatgtc
gtttgcgaatgggatccgttcaatgccgttatcgtttcagaagctaccggtaaggttaag
ttcgataatgtaatcgaaggtgtgacttataaagtcgaatcggatgagcaaaccggtctt
cgtgaaaagatcattatagaatctaaggatagaacccgagttccatcggctcttattttg
gatgaaaaaggagatgtaattcgctcctattcattgcctatgggggctcaccttatggtt
gatgaaggtcaggaaataaaatcaggggatgtgtttgttaagatcccgcgtgccgtaggt
aaagccggagatattaccggaggtcttcctcgtgttaccgagttgtttgaggctcgtaat
ccgtctaatcctgctgtcgtttctgaaatcgacggagaagttaatttcggaaaagtaaaa
cgaggtaatcgtgaaatttctgtaacttctaaaaccggacaggttaagaaatatttagtt
cctttgtcaaaacaaatattggtacaagagaatgactatgtccgggccggaactccactt
tcggacggtgctattactccttctgatattttggcgataaaaggaccgactgccgttcag
gaatatattgttaatgaggttcaggatgtgtatcgtttgcaaggtgtgaaaatcaatgat
aaacactttgaggttatcgtccgtcaaatgatgcgtaaggtaatggtgatagatccgggt
gatactcgtttcttggaacaacagattatcgataagcacgaatttatggaggaaaatgat
cgtatctggggtaaaaaagtggttatcgatgccggagattctcagacaatgaaaccggga
cagattgtgactgctcgtaaattgagagatgaaaactctgcattgaaacgtcgtgattta
catttggtagaagtgcgcgatgctgtgcctgctacttctgaacaaattttgcaaggtatt
actcgtgcggctcttcagacttccagctttatgtcggctgcttcgttccaagaaactaca
aaagtgttgaatgaggctgctattaacggtaaagtagataaacttgaaggaatgaaggaa
aatgtaatttgtggacatctgattcctgccggtactggtcagcgtgaatttgacaaattg
gttgtcggttctaaagaagaatttgaccgagtatttgctaatcggaaaaatgtaacggat
ttttaa
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