Coprobacter fastidiosus: Cfast33896_16150
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Entry
Cfast33896_16150 CDS
T09127
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas02020
Two-component system
cfas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Cfast33896_16150 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Cfast33896_16150 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfas03021
]
Cfast33896_16150 (rpoN)
Transcription machinery [BR:
cfas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cfast33896_16150 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Band_7
DUF6565
LacI
HTH_21
Motif
Other DBs
NCBI-ProteinID:
BEG62660
LinkDB
All DBs
Position
2078232..2079689
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AA seq
485 aa
AA seq
DB search
MLKQQLQQKLQQKLSPQQIQVIRLLELTAIELEERIKQELIDNPALDEGAEEHENPDTDE
FGNEDTDASAESAEDISMGDYLTEDDIPDYKLEADNFSKDQKHEDIPFSGGSTFHDFLLK
QLGERNLSEQDAKIAEYIIGNIDDNGYLQRPLSAISDDLIFQVGIDISTERLEDLLQMIQ
DFEPAGVGASNLRECLLLQLERHEGTPAALLAYKIIDKSFDEFTKKHYDKIQKQYNVSEE
ELKKAIHEITMLNPKPGSSWSDSFSDGMSHIIPDFIVDSHDGELTLSLNNSNIPELRVNR
SYTHMLEDYMGNKQNQTRDKKDALLFVKQKLDSAQWFIDAIKQRQQTMLNTMQVIIDLQR
DFFLTGDESNLKPMILKDVAERTGYDISTISRVSNSKYVQTNFGIFPLKYFFSESMQNES
GEEISSREIKKILQQCIENEDKRKPLADDKLCDLLKEKGYVIARRTVAKYREQLGIPVAR
LRKEI
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacaacaactacaacaaaagctgcaacagaagctgtcaccccaacaaatacag
gtaatacgactgcttgagctgacggctattgagctggaggaacgcatcaaacaagaactg
atcgataatccggcacttgacgagggggcagaagagcatgaaaaccccgataccgacgaa
ttcggaaacgaagataccgatgcatctgccgaaagtgctgaagacatttccatgggagat
tacttgacggaagacgatatccccgactacaaactcgaggcagacaatttctcaaaagac
caaaagcatgaagatattcctttttccggcggatcgacttttcatgattttctcttgaaa
caattaggagaacgaaacctgtcggaacaagatgccaaaatagcagaatacattatcggt
aatatcgatgacaacggttatttgcaacgtccgttgtctgcaatatctgacgatctcatt
ttccaggtaggaatagacatttccaccgaacgactcgaagatctgctgcaaatgatccag
gatttcgaacccgcaggagtcggagcgtccaatctgcgcgaatgtttgttattgcagtta
gaacgccatgaaggtactccggcagcactattagcctataaaatcatagacaaatctttc
gatgaattcacaaaaaaacattatgacaaaatacaaaaacaatataatgtttctgaagaa
gaactgaaaaaggcaattcacgaaatcacaatgctcaatccgaaaccgggaagttcatgg
agcgattcgttttctgacgggatgagccatattatccccgatttcatagtcgattctcat
gacggagaactgacattgagccttaataacagcaatataccggaattaagggtcaaccgc
tcttatactcacatgttagaggattacatgggaaataaacaaaaccaaacccgggataaa
aaagatgcgttattattcgtaaaacaaaaattagattcggctcaatggtttatcgacgct
atcaaacaacgtcaacagacaatgttgaatacgatgcaagtaattatcgatctacaaaga
gattttttcctgacaggagacgaaagcaatctgaaaccgatgatactcaaagatgttgcc
gaacgtacaggatatgatatatctaccatctcccgagtaagtaacagcaaatatgtgcaa
actaatttcgggatttttcccttgaaatattttttctccgaatcgatgcaaaacgaatcg
ggtgaagaaatttcatctcgggaaataaagaaaattttacaacaatgcatcgagaacgag
gataaacggaaacctctggcagacgataaactctgcgacctgctaaaagaaaagggctat
gttatcgctcgccgtacagtcgcaaaatatcgggaacagttaggcattccggttgcccgc
ttaagaaaagaaatataa
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integrated database retrieval system
