Coprobacter fastidiosus: Cfast33896_17250
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Entry
Cfast33896_17250 CDS
T09127
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cfast33896_17250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfas03019
]
Cfast33896_17250
03009 Ribosome biogenesis [BR:
cfas03009
]
Cfast33896_17250
Enzymes [BR:
cfas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cfast33896_17250
Messenger RNA biogenesis [BR:
cfas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cfast33896_17250
Ribosome biogenesis [BR:
cfas03009
]
Prokaryotic type
rRNA helicases
Cfast33896_17250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BEG62770
LinkDB
All DBs
Position
2217507..2219297
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AA seq
596 aa
AA seq
DB search
MKTFEELGIDSKILKAISEIGFENPMPVQEQVIPLLLAENTDIVALAQTGTGKTAAFGLP
VIQKIDVSDNYPQALILSPTRELCLQIASDLNDYSKYISGLKILPVYGGSSIESQIRTLK
KGVQIIVATPGRLIDLMNRKMVKLDRISTVIMDEADEMLNMGFTESINEILAAIPEERNM
LLFSATMPAEIAKIAKNYMSNPKEVVIGSKNEGAENIKHVYYLVHAKDKYLALKRIADYY
PNIYGIIFCRTRRETQEIADQLIQDGYNADSLHGELSQAQRDAVMQKFRVKNLQLLVATD
VAARGLDVDNLTHVINYGLPDDIETYTHRSGRTGRAGKKGTSIAIIHVKEKGRMRDIEKI
IGKKFEKGHIPTGGQICEKQLFNLVDKIEKVKVNEEEIASYLPSIFRKLEWLSNEDLIKR
IVSLEFNRLIDYYADASELDIPEDRNTKERGNQRGERTRSKARKAEEGYSRLFINLGKAD
GFYPSTLIEMINDNVKGHASIGRIDVLPNFSFFEVEEKSARNIIGSLKNINFFGKRVSVE
PADKKESSGKREHSDRKGGFGKRDSGGKSSQKRGSFGNEYKSSKSRGRENSKKKRR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatttgaagaattaggaatcgacagcaaaatattaaaagcgatttctgaaatc
ggatttgagaatccaatgcctgtacaagaacaggttattccccttttacttgccgaaaat
accgatatcgtagctttggctcaaaccggaaccggaaaaactgcggcattcggacttccc
gtaattcaaaaaatagatgtcagcgacaattatcctcaagcccttatcttaagtccgaca
agagaactgtgcctgcaaatagccagtgatctgaacgattattcaaaatatatcagcggg
ctgaaaatacttcccgtttacggaggatcaagtatcgaaagccagataagaacattgaaa
aaaggagtacaaatcatcgtagcgactccgggccgtctcatcgatttgatgaacagaaag
atggtaaaactcgaccggataagtacagtgattatggacgaagccgatgagatgctcaat
atgggcttcacggaaagcataaacgaaatattagccgctattccggaagaacgcaatatg
ttactattctcagctaccatgccggcggaaatagccaaaatagcaaaaaactacatgagt
aatcccaaagaagtggtaatcgggagcaaaaatgaaggagctgaaaatataaaacatgtt
tactatctggtacacgcaaaagataaatatctggcattaaaacgcattgccgactattat
cccaatatatacggcatcattttctgccgtacccgacgggagacccaagagatagcagac
caactgatacaagacggatacaatgcagattctttacatggagagttatctcaagcacaa
cgggatgccgtcatgcaaaaattcagagtaaaaaaccttcagctattggtcgcaaccgat
gttgcggcacgcggtctcgatgtagataacctgacccatgtcatcaactacggattacca
gatgacatcgagacatacactcacagaagcggtcgtacaggccgtgccggaaaaaaggga
acttccatcgccataattcacgtaaaagaaaaagggcgaatgcgggatattgaaaaaatc
atcggtaaaaaattcgaaaaagggcatattccgacaggaggtcagatatgcgaaaagcaa
ttgtttaatctggtagacaaaattgaaaaagttaaagttaacgaagaagaaatcgcatct
tatctgccatccatcttccgcaaactggagtggttaagcaacgaagacctcatcaagcga
atcgtttcgctcgaatttaacagactgatcgattattatgcagatgcaagcgaactggat
attccggaggacagaaatacgaaagagcggggaaatcaacgtggagaacgcacaagaagt
aaagccagaaaagcagaagaaggctattcccgcctttttatcaatcttggaaaagccgac
ggtttttaccccagtacattaatcgaaatgattaacgacaacgttaagggacacgcctcc
atcggcagaatcgatgttcttccgaacttctcatttttcgaagtagaagagaaatctgct
cgtaacataatcggaagcctgaaaaacatcaatttcttcggcaaacgggtttctgtagaa
ccggcagacaaaaaagaaagctccgggaaacgggaacattccgacagaaaagggggattc
ggtaaaagagattccggaggaaaatcttcacaaaaacgaggaagttttggaaacgaatac
aaatcttccaaaagtcggggacgtgaaaacagtaagaaaaaacggagataa
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