Coprobacter fastidiosus: Cfast33896_23200
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Entry
Cfast33896_23200 CDS
T09127
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cfas
Coprobacter fastidiosus
Pathway
cfas03030
DNA replication
cfas03430
Mismatch repair
cfas03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cfast33896_23200 (dnaE)
03430 Mismatch repair
Cfast33896_23200 (dnaE)
03440 Homologous recombination
Cfast33896_23200 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfas03032
]
Cfast33896_23200 (dnaE)
03400 DNA repair and recombination proteins [BR:
cfas03400
]
Cfast33896_23200 (dnaE)
Enzymes [BR:
cfas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cfast33896_23200 (dnaE)
DNA replication proteins [BR:
cfas03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cfast33896_23200 (dnaE)
DNA repair and recombination proteins [BR:
cfas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cfast33896_23200 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HHH_3
DUF6282
Med9
Motif
Other DBs
NCBI-ProteinID:
BEG63365
LinkDB
All DBs
Position
complement(3013325..3017218)
Genome browser
AA seq
1297 aa
AA seq
DB search
MHPFIHLHVHSQYSILDGQASIQALVDKAMRDGMRGIAITDHGNMFGIKEFYNYVNKKNG
GVKSEIKDLKKRISDIENGKIECEDRDAELSRCKAELEEKEKKLFKPIIGCEMYVARNRL
QDKNGKPDQSGYHLIVLAKNLKGYKNLIKLVSKAWTEGFYMRPRTDRVELEKYHEGLIVA
SACLGGEVPKKINKGLLDEAEEAVRWYKNLFGEDYYLELQRHKATVPNANHEAYPLQVQA
NTKILEYAKKYNIKVICTNDVHFVDEEHAEAHDRLICLSTGKDLDDPNRMYYSKQEWMKT
TEEMNALFADVPEALINTNEILDKVEFYSIDHAPIMPTFAIPEEFGTEEGYRQKFTEKDL
FDEFTQDENGNVVMDQVAAEAKINTLGGYDKLYRIKLEADYLKKLAFDGAKTRYGDPLSP
DVKERLIFELHIMKTMGFPGYFLIVQDFIAAARNMGVSVGPGRGSAAGSAVAYCLGITQI
DPIQYDLLFERFLNPDRISLPDIDIDFDDDGRGEVLRWVTEKYGHEKVAHIITYGTMATK
MAIKDVARVEKLPLSESDRLTKLIPDRLPEIDGKSPKINLKNCIAAVPELQQACESENML
IRDTMKYARMLEGNVRGTGVHACGTIICRDDITDWVPVSTADDKETGEKMLVTQYEGSVI
EDTGLIKMDFLGLKTLSIIKEAVANIKSHRGIDIDIDKISINDDATYKLYSEGKTVGTFQ
FESAGMQKYLRELQPTTFEDLIAMNALYRPGPMDYIPQFIDRKHGREPIVYDIPIMEKYL
KDTYGITVYQEQVMLLSRLLANFTRGQSDALRKAMGKKLKDKLDALKPLFINNGQKNGHD
PKTLEKIWADWEKFASYAFNKSHATCYSWVAYQTAYLKANYPSEYMAAVMSRNISNITEI
TKLMDECKAMGIKVLGPDVNESNLKFNVNKDGNIRFGLGAVKGVGESAVRSIMEEREKNG
PFTSIFDFVQRVNLNACNKKNIESLALSGGFDSFPEIKREQYFAQNSKGEVFLETLVRYG
NKYQVDKAAQINSLFGGSDAIEVAKPEIPAAESWSDLERLEKERDLVGIYLSAHPLDDYA
LTLEYGCNTRMSELEDRQALINKDIVMGGIVTGFREGMTKTGKPFGILKIEDYSGSAEIP
LFGKDFVDFRKFGYNGMYLLIKAKCQPRKFNESVLDIRIVSIELLQDVKNKLLESLTVVI
PIDQINNGIIEPLTDLLKPDKESNTELFFEIYDPEEKYQVKLFARSHKVNVTKDLIRFIE
DNNGLSFKINGISRKEMQRNTEEAEDELVLYGTEASA
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgcatccatttatacatttacacgtccattctcaatattctattcttgacggacaagcg
agtatacaggctttggtcgataaagctatgcgtgacggcatgcggggtattgccattacc
gatcacggcaacatgttcggtatcaaagaattttataattatgtaaataaaaaaaatgga
ggtgtcaaaagcgagataaaagacctgaaaaaaagaatatcggacatcgaaaacggaaaa
atagaatgtgaagaccgggatgccgaactctcacgctgtaaggctgagttggaagagaaa
gaaaaaaaactcttcaaaccgattatcggttgcgaaatgtatgtggcaagaaaccgctta
caagacaaaaacggtaaacccgatcaaagcggataccacttgatcgttcttgcaaaaaat
ctgaaagggtacaaaaacctgattaaattggtatcaaaagcttggaccgagggtttctat
atgcgtccaagaaccgaccgtgtcgaattggaaaaatatcatgaagggctgatcgtcgca
tctgcctgtttgggtggtgaagtcccgaaaaaaataaacaaaggtttgctcgacgaggca
gaagaagcggtacgatggtacaaaaacctgttcggtgaggattactatctggaattacaa
cggcacaaagctaccgtaccgaatgccaatcacgaagcatatcctttgcaggtacaagct
aataccaaaattctggaatatgcaaaaaaatataatatcaaggtaatctgtaccaatgac
gtgcattttgttgatgaagagcatgcagaggctcacgaccggctgatctgcctgagtacg
ggaaaagaccttgatgaccccaaccgcatgtattattcgaaacaggaatggatgaaaaca
accgaagagatgaacgctctcttcgccgatgttcctgaagcccttatcaataccaatgaa
atactggataaggtggagttctattcgatcgatcatgctcctatcatgccgacattcgct
attcctgaagaattcgggacagaagaaggatataggcaaaagtttacggaaaaagatttg
ttcgatgaatttactcaggatgaaaacgggaatgtcgttatggaccaggtcgctgcggaa
gctaaaataaatactttaggaggatatgacaaactataccgtatcaaactggaagcagac
tatttaaagaaattagctttcgacggggcaaaaactcgttatggagatccattaagcccg
gatgtaaaggaacggctgatcttcgagctccatatcatgaaaacaatgggtttcccggga
tacttcttgatcgtacaggattttatcgctgcagcccgtaacatgggggtatcggtaggt
ccgggacgaggatcggctgccggatcggcagttgcctactgtctcgggattacccaaata
gacccgatacaatatgacttgctgttcgagcgttttttgaatcccgaccgtatttcttta
ccggatatagacatcgacttcgacgacgacggacgaggagaagtacttcgttgggtaacc
gaaaaatacggacacgaaaaggtagctcatattattacctacggtactatggcaaccaaa
atggctatcaaagatgttgccagagtagagaaattgcctctttccgaatcagaccgtctc
acaaaattgattcccgacagattgcctgaaatagacggtaaatctcctaaaatcaatcta
aaaaattgtattgccgcagttcccgaattgcaacaagcctgcgaatcggaaaatatgttg
atacgcgacacgatgaaatacgctcgtatgcttgagggaaacgttcggggtacgggtgtc
catgcttgcgggacgattatttgtcgagatgatattaccgattgggttccggtaagtact
gccgatgataaagagaccggtgaaaaaatgctggtcactcaatatgaaggttcggtaatc
gaagatacgggattgataaaaatggacttcctgggattaaaaacactatcgattatcaaa
gaagccgtagcgaatataaaatctcaccgaggcatcgatatcgatatcgacaaaatatcg
ataaacgacgatgcgacctataaattgtacagcgaagggaaaaccgtgggaacattccag
tttgaatcggccggaatgcaaaaatatttgcgcgaactgcaaccgacgacctttgaagac
ctcatcgccatgaatgctctctatcgaccaggacctatggattatattccgcagtttatc
gaccggaaacacggaagagagccgatcgtatacgatattccgattatggaaaagtacctg
aaagatacttacggaattacagtgtatcaagaacaggtgatgcttctctcacggttattg
gctaactttacgcgtggacagtccgatgctttgcgtaaagcgatgggaaaaaaattaaag
gataaactggatgctttaaaaccgctgtttataaataacggacaaaaaaacgggcacgat
cccaaaactttggaaaaaatctgggctgactgggaaaaattcgcgtcgtacgcattcaac
aagtctcatgcgacatgctactcttgggtggcttaccagacagcttacctgaaagccaac
tacccttcggaatatatggcagccgtgatgagccgcaatatctcgaatattacggaaatc
accaaactcatggatgaatgtaaagctatgggtattaaagtgctcggtccggatgtaaac
gaaagtaatttgaaattcaacgttaacaaagacggcaatatccgcttcggattgggagct
gtaaaaggtgtaggagaaagtgctgtccgcagcattatggaagaaagagagaaaaatggt
ccgttcaccagtatttttgattttgtgcaacgggtcaatttgaatgcttgtaacaagaag
aatatagaaagtcttgccttatccggaggattcgacagttttccggaaataaaaagagaa
caatatttcgctcaaaacagtaaaggtgaagttttcctcgaaacccttgttcgctacggt
aacaaatatcaagtagataaagcggctcaaattaactctctgttcggaggaagcgatgct
atagaagtagccaagcccgaaattcccgctgccgaaagctggtctgatttggaacgactg
gaaaaggaacgggatttagtaggaatttacctgtctgcacatcctctggacgactatgct
ttgactctcgaatatggatgcaatacccgaatgagcgaactggaagaccgtcaagcctta
atcaataaagatattgtcatgggcggtatcgtaacaggtttcagagaaggaatgacaaaa
accggtaaaccattcggaattctaaaaatcgaggattattcaggatctgccgagatacct
cttttcggaaaagatttcgtcgatttccggaaattcggatataacggcatgtatctgctt
atcaaagcaaaatgtcaaccccgaaaattcaatgaaagcgttctggacatacgaatcgtc
tcgatagagttattgcaagacgtaaaaaataaattattggaaagtcttactgtagtaatt
ccgatcgaccagatcaacaacggtataatagagccgctgacagacttgctcaaacccgat
aaagaatcgaataccgaacttttcttcgaaatctatgatcctgaagaaaaatatcaagta
aagcttttcgcccgatcacacaaggttaacgtaacaaaagacctaatccgatttatcgaa
gataacaacggattatcattcaagataaacggaatttcccgaaaagagatgcaacgcaat
accgaagaggcagaagacgaactggtactatacgggacagaggcatcggcttaa
DBGET
integrated database retrieval system
