Clostridium felsineum DSM 794: CLFE_006810
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Entry
CLFE_006810 CDS
T08216
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLFE_006810 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_006810 (mfd)
Enzymes [BR:
cfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLFE_006810 (mfd)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLFE_006810 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
Castor_Poll_mid
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
URZ14683
LinkDB
All DBs
Position
728878..732393
Genome browser
AA seq
1171 aa
AA seq
DB search
MRLDGLMHPLKSSNKFQDAIYKVRNDKFPIELSGISESGKSYLISGLYEELDNPFLVITD
SDSEAKKIYEDLLFYTQNVYYIPTKEVVFYNIYAISGDLRWERLKVIRKMMSRGKKIIVT
SVENLAAVYLPVDLYKEYTFKLSLGDMIDSKEITRKLVQCGYEHVESVDAKGQFSVKGGI
IDLYSPISDVPYRVELFGDEIESIRSFNTESQRSIEKVNKIEIFPAKEIILTDEALSKGY
EAIKSELESSLSRLKGSNEESYTKLKATMEYNLEALKERSGFETIDTFIPYFYDNTSSFF
DYLKNAFIFVDNYERCKGKIESVYYEFEQNYENFLERGDILPKQGNIIVPKDNIYETLKN
EKRINLESIGKSSNNNSSEGIVFEEITLLSYQGQMDLLINDIKALKEEKYRTVILCGTKS
KGQRLVETLRDRGIESVYKDSILNVDYGEIVISPGSQLRGFKYPEFRLCVISDKEIFGTA
KKKKEKRKNKKGVGKIKSFTELKPGDYIVHVNHGIGVFKGIKQLEVQGHKKDYLELTYAV
DDKLYVPVEQLDLVQKYIGSEGKTPKVNKLGSSEWVKAKNKVRKSINEIAEELVKLYAVR
TTVNGFKYSKDTVWQKQFEEEFPYNETQDQLIAIEDIKSDMESGKVMDRLICGDVGYGKT
EVAIRAAFKTVMDGKQVAFLVPTTILAEQHYNNFQKRFKDFPVKVDMISRFRSQAEQKVT
LKALKEGNVDIIIGTHRILNKEINFKDLGLLIIDEEQRFGVSHKEKLKQFKKNVDVLTLS
ATPIPRTLHMSLTGVRDISVIETPPEERYPVQTYVVEYNDQLIRDAIMRELGRGGQVFFV
YNKVESIKEMASNLSKLIPEAKVAIAHGQMSERELEKVMIDFMEEKYDILLCTTIIETGI
DIQNVNTLIIYNADKMGLSQLYQLRGRVGRTNRMAYAYFTYKKDKILTEVAEKRLKAIKE
FTQLGSGFKIAMRDLEIRGAGNIMGSAQHGHMATIGYDLYCRMLEETIKEIKGEMQNEPV
ETTIDLKVDAYIPSSYIDDETLKISIYKKIAAIDSYDEMIDVKEELEDRFSSIPQSVENL
MKIAYLRSVGRELGILEIKDKINQLELKFEGNNRINKNMVSGLLKDYGKFILFKMGENPI
ILYNLKSVKRESILEKLEEFLKYMKSLVETN
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagacttgatgggcttatgcatcctctgaaaagtagtaataaatttcaagatgctatt
tataaagtaagaaatgacaaatttcctatagaattgtcgggaatttccgaatctggaaaa
agttatttaataagcgggttgtatgaagagttagacaacccttttttagtgattacagat
agcgattcagaggctaaaaaaatatatgaagatttattgttttatacgcaaaatgtatat
tatattcctacaaaggaagtagtgttttataatatatatgctatatctggagacttaagg
tgggaaagattaaaggttataagaaaaatgatgtctagaggtaaaaaaataatagtaact
tctgttgaaaatttagcagcagtttatttacctgtagatttatataaagagtatactttt
aaactttcgttaggagatatgattgattctaaagaaattacaagaaagctagttcaatgt
ggatatgaacatgttgaaagtgtagatgctaaagggcaattttctgtaaagggaggaata
atagatttatattcgcctatatcagatgtgccttatagagttgagctttttggagatgaa
atagaatctataagaagtttcaatactgaatctcaaagaagtatagaaaaggtaaataag
atagaaatatttccagcaaaggagataatacttacagatgaagctttaagtaagggatat
gaagctattaaaagtgagcttgaaagttctttaagtaggctcaaaggaagtaatgaggaa
agctatactaagcttaaagctactatggaatataatcttgaggctttaaaagaaagatca
ggctttgaaactatagatacttttattccttacttctatgataatacatctagttttttt
gattacctaaaaaatgcatttatatttgtagataattatgaacgctgcaaaggtaaaata
gaaagtgtatattatgaatttgagcaaaattatgaaaatttcctagaaagaggagatatt
cttcctaagcaaggaaatataattgttcctaaagataatatatatgaaactttaaaaaat
gaaaaaagaataaatttagagtctataggaaaaagttctaataataattcgagtgaagga
atcgtatttgaggaaattactcttttaagttatcaaggacaaatggatttattaattaat
gatataaaagctttaaaagaggagaagtatagaactgtaatattatgtggaacaaaatca
aaaggtcaaagacttgtagaaacacttagggatagaggaattgaaagtgtatacaaagat
agtattcttaatgtagattatggagaaatcgttatatctccaggaagtcaacttagagga
tttaaatatcctgagtttagattatgtgttatttctgacaaggaaatattcggaactgct
aaaaagaaaaaagagaaaagaaaaaataaaaaaggtgtaggaaaaattaagagctttaca
gaacttaaaccgggcgattacattgtacatgttaatcatggtataggtgtatttaaagga
ataaaacaacttgaggttcaaggacataaaaaggattatttagaattgacatatgcagtt
gatgataaattatatgttcctgtagagcaacttgatttggttcagaaatatataggaagt
gaaggcaaaacacctaaggtaaataagcttggaagcagtgaatgggttaaggctaaaaat
aaggttagaaagtcaataaatgaaatagctgaggagcttgttaaattatatgcagtaagg
acaactgttaacggttttaagtattctaaggatacagtatggcagaaacaatttgaagag
gaatttccttataatgaaacacaagatcaacttattgctatagaagatataaagagtgat
atggaaagcggaaaagtaatggatagacttatatgcggtgatgttggttatggtaaaaca
gaagttgctataagagccgcatttaaaacagtaatggatggaaaacaggtagcttttctt
gtaccaacaactatccttgcagagcagcattataataactttcaaaaacgttttaaagac
tttcctgtgaaggtagatatgataagtagatttagaagtcaagcagagcaaaaggtaacg
cttaaagctctaaaagaaggaaatgtagatataataataggtactcatagaattttaaat
aaggagattaactttaaagatttgggacttcttataattgatgaggaacaaagatttggt
gtttcacataaagaaaagcttaaacaatttaagaagaatgtagatgttttaacattgtca
gcaacaccgataccaagaactctccacatgtctcttacaggagttagagatataagtgta
attgaaactccgccagaagagagatatcctgtacaaacttatgttgttgaatataatgat
cagctgataagagatgcaataatgagggaacttggaagaggtggtcaagtattcttcgta
tataataaagtagaatctataaaagaaatggcatctaatttaagtaagcttattccagag
gctaaggttgcaatagcgcatggtcaaatgtctgagagagaactggaaaaagttatgatt
gattttatggaagaaaaatacgatatattattatgtacaacaataatagaaacaggaatt
gatattcaaaatgtaaatactcttataatatataatgctgataagatgggtctttctcag
ttatatcaacttaggggtagagtaggaagaactaatagaatggcttatgcttattttact
tataagaaagataaaattttaacagaggttgctgaaaagagacttaaagcaatcaaggaa
ttcactcaattaggttctggttttaaaatcgcaatgagagatcttgaaataaggggtgca
ggaaatataatgggatctgctcagcatggacatatggccacaataggttatgatttatat
tgtagaatgctagaagaaaccataaaagagataaagggtgaaatgcaaaatgaacctgta
gaaaccacaatagatttaaaagttgatgcatatataccaagttcatatattgatgatgag
actttaaaaatatcaatttataaaaaaatagcagcaattgattcatacgatgagatgata
gatgtaaaagaggaacttgaagatagattctcatcaattcctcaatctgtagaaaatctt
atgaaaatagcttatttaagaagtgttggaagggaacttggaattttagagataaaggat
aaaataaatcaacttgaacttaaatttgaggggaacaatagaattaataaaaatatggtg
agtggattgcttaaagattatggtaaatttatactgtttaaaatgggagagaaccccatt
attttatataatttaaagagtgtaaaaagagaatcaatattagaaaaattagaagaattt
ttaaaatatatgaaatctctagttgaaacaaattaa
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