| Entry |
|
|---|
| Symbol |
rpoC
|
|---|
| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
|
|---|
| KO |
|
|---|
| Organism |
cfb Clostridium felsineum DSM 794
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:cfb00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLFE_007800 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cfb03021]
CLFE_007800 (rpoC)
03400 DNA repair and recombination proteins [BR:cfb03400]
CLFE_007800 (rpoC)
Enzymes [BR:cfb01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLFE_007800 (rpoC)
Transcription machinery [BR:cfb03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLFE_007800 (rpoC)
DNA repair and recombination proteins [BR:cfb03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLFE_007800 (rpoC)
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
829662..833210
|
|---|
| AA seq |
1182 aa
MELNKFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPIKDWECH
CGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMS
PRALEKVLYFASYLVLDPKETPLLKKQLLNEKEYREAADKYGEESFEAGMGAESIKKLLQ
EIDLNQLGEELKENLKTSTGQKRVRIIRRLEVVESFRKSTNKPEWMIMDVVPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKKLVETGAAHNIKSAKRMVERVQNQVWDVLEEVISDHPVMLNRAPTLHR
LGIQAFQPILVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAESRFLMLAAHNIL
KPSDGKPVCVPTQDMVLGSYYLTIDKDGVKGEGKAFTNVDEALMAYQLGEIDIHAKIKVR
LEKEMDGSIISGIIDTTIGKLIFNESIPQDLGFIDRSVAGNELLLEIDFLVGKKNLGGII
DKCYRKHGPTKTSIMLDKIKAKGYHYSTISAITVSTSDMTVPPNKKNLMSEAEASVEKIE
KMYRRGFISDDERYERVISTWTKTTESVADALMDNLDQFNPIFMMADSGARGSKSQIKQL
AGMRGLMANPSGRIIELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRRL
VDVSQDVIVRIEDCGAKEGFEVSEIKEGNEVIESLSERLIGRYTAEDIIDPTNKEVIVKQ
NEYVDEDKALRIEKVGVKKVKIRSVFTCDCKYGVCAKCYGMDMGTAQKISIGEAVGIVAA
QSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETK
KKRIVYVATENGEEVSYDIPFGSSLKVKNGQNVSAGDEITEGSVNPHDIIRIKGVNAVKN
YLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKVKVEDSGDTELLPGTMIDIFDFKEENQK
IEEKGGKPAEARVSLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENV
TIGKLIPAGTGMTRYKSIEIDPVVTEKSSDDEGFMSEDKIEG |
|---|
| NT seq |
3549 nt +upstreamnt +downstreamnt
ttggaattaaataaatttgatgcattgcaaataggattggcttcacctgaaaagataaga
gagtggtccagaggggaagtaaagaaaccagaaactataaactataggacattaaaacct
gagaaggatggtctattttgtgaaagaatatttggaccaataaaagattgggaatgtcac
tgcggaaaatataaaagagttagatataagggtatagtttgtgatagatgtggagtagaa
gtaactaaatcaaaggttagacgtgagaggatggggcatattgaattagctgccccagta
tctcatatatggtactttaaaggtataccatcacgtatgggacttatattagatatgtct
ccaagagcgcttgaaaaggtattgtattttgcatcatatcttgttttagaccctaaagaa
actcctttactaaagaaacaacttttaaatgaaaaggaatatagagaagcagctgataaa
tatggagaagaatcctttgaagctggaatgggtgcagaatcaattaagaagttacttcaa
gaaatagatttaaatcaattgggagaagaacttaaggaaaacttgaaaacaagtacagga
caaaagagagtaagaataataagaagacttgaggttgttgaatcgtttagaaaatctact
aataaaccagaatggatgataatggatgttgtaccagtaatacctccagatttaagacct
atggttcaattagatggtggaagatttgcaacatctgatttaaatgacttgtatagaaga
gttataaacagaaataacagattgaagaaactgttagatctaggagcgcctgacataata
gtaagaaatgaaaaaagaatgcttcaagaagctgtagatgctcttatagataatggtaga
agaggaagacctgtaacaggacctggaaatagacctttaaaatcattatctgatatgctt
aagggtaaacaaggaagatttagacaaaacttacttggaaagcgtgttgactattcagga
cgttctgttatagttgttggtcctgatttaaaaatgtatcagtgtggacttcctaaggag
atggcacttgaattatttaagccttttgtaatgaagaaacttgttgaaacgggagcagca
cataatataaaaagtgcaaaaagaatggttgaaagagttcaaaatcaagtatgggatgta
cttgaagaagttatctctgatcatccagtaatgttaaaccgtgctccgacactacataga
cttggaattcaagcattccaacctattttagtcgaaggaagagcaataaagcttcatcca
cttgcatgtacagcgtataatgcagattttgatggagaccaaatggctgttcacgtacct
ttatcagttgaagcacaagcagaatcaagattccttatgcttgcagcgcataatatatta
aagccatcagatggtaaaccagtatgcgtacctacacaagatatggtacttggatcatat
tatcttacaattgataaagatggagttaaaggtgaaggaaaagcattcaccaatgttgat
gaggcattaatggcatatcaacttggagaaattgatatacatgctaaaattaaagtaaga
ttagaaaaagagatggatggtagtattataagtggaataatagatactactattggaaag
cttatatttaatgaatctatacctcaagatttaggatttatagatagaagcgttgctggt
aatgaattgcttcttgaaattgattttcttgttggtaagaaaaatctaggtggaataata
gataaatgttatagaaaacatggccctacgaaaacaagtattatgcttgataaaataaag
gcaaagggatatcattattcaacaattagcgctataacagtttcgacttctgatatgact
gtaccacctaataagaaaaatttaatgtctgaagctgaagcatcagttgaaaaaattgaa
aaaatgtatagaagaggatttatatctgatgatgaaagatatgaaagagtaatatctaca
tggacaaagacaactgaaagtgttgcagatgcccttatggataatcttgatcaatttaat
cctatatttatgatggctgattcaggagccagaggttctaagagtcagattaagcaactt
gccggaatgagaggtcttatggcaaatccttctggtagaataatagagcttcctataaag
gcttcattcagagagggtcttgatgtattggaatactttatttcaactcatggagcgaga
aaaggtaatgccgatacagcgcttaagactgctgattcaggataccttacaagaagactt
gttgatgtaagtcaagatgttattgtaagaattgaagactgtggagcaaaagaaggtttt
gaagtttctgaaataaaagaaggaaatgaagtaattgagagcctatctgaaagattaata
ggaagatacacagcagaagatataattgatcctacaaataaagaagttattgtaaagcaa
aatgaatatgtggatgaagataaagctttaagaatagaaaaagtaggagttaaaaaggtt
aaaataagatcagtatttacttgtgattgtaagtatggagtttgtgcaaaatgttatgga
atggacatgggaacagcacaaaaaataagtataggagaagcagttggtatagtagccgct
caatcaattggtgaacctggtacacagcttacaatgagaactttccatacaggtggagtt
gcaggatcagatataactcaaggtcttccaagagttgaggaattatttgaagcaagaaag
cctaagggacttgcaattgtaagtgaagtatctggtactgtaagaatagaagaaactaaa
aagaagagaatagtatacgtagcaactgaaaacggagaagaagtaagttatgatatacca
tttggttcaagtttaaaagttaaaaatggtcaaaatgttagtgccggagatgaaataaca
gaggggtcagtaaatcctcatgatattattagaatcaagggagtaaatgctgttaaaaat
tacttgctttctgaagttcagaaggtatatagactacaaggtgttgatataaacgataag
catcttgaagttgtagtaagacagatgacaagaaaagttaaggttgaagattcaggtgat
actgaattacttccaggtactatgatagatatatttgactttaaagaagaaaatcaaaag
atagaagaaaaaggtggaaagcctgctgaagctagagtttctctacttggtataacaaaa
gctgcgcttgctactgattcattcttatcagcagcatctttccaagaaacaacgagagtt
ttaacagatgcagcaataaaaggaaaatcagatccgcttgttggattaaaggaaaatgta
actataggaaaattaattccagcaggtacaggaatgactagatacaagagcatagaaata
gatccagtagttaccgaaaaaagttctgatgatgaaggttttatgtcagaagacaaaata
gaaggttaa |
|---|
