Clostridium felsineum DSM 794: CLFE_012570
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Entry
CLFE_012570 CDS
T08216
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLFE_012570 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfb03019
]
CLFE_012570 (dbpA)
03009 Ribosome biogenesis [BR:
cfb03009
]
CLFE_012570 (dbpA)
Enzymes [BR:
cfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CLFE_012570 (dbpA)
Messenger RNA biogenesis [BR:
cfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLFE_012570 (dbpA)
Ribosome biogenesis [BR:
cfb03009
]
Prokaryotic type
rRNA helicases
CLFE_012570 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SWI2_SNF2
AAA_19
eIF-4B
Motif
Other DBs
NCBI-ProteinID:
URZ15239
LinkDB
All DBs
Position
1342191..1343636
Genome browser
AA seq
481 aa
AA seq
DB search
MKKLEFKDLGLSEEILESIGKLGYKTPSSIQEKVIPIILKNRDIIAKAKTGSGKTAAFAI
PICEKIELEEKAPQVLVLTPTRELAYQIKEDFLNIGRFKRLRCVSIFGKEPISNQIRELK
QRCHIVVGTPGRILDHIERETLNLSKIKYVVIDEADEMLNMGFIEQVEGILSKLEKNRNT
LLFSATLPETIVNLSEKYMKNAENVEVKDEASSKGEIEELYYKVEAREKFSLLVKLIYKE
LPGSSIVFCRTKDNVEEVFGKMKDKGFICGALHGGMLQQDRIQVMNDFKKGKFTFLVATD
VAARGIDVENITHVINYDIPMEKESYIHRIGRTGRMGNRGKAITFVTMKEERFLKDIENE
FSRYIKEGNMPTKEEVLKGRETLKSTSQKLNKTKHNKIEKLNKDITKLHLSAGKKKKIRP
GDIAGTISSIEGIKPEDIGIIDIHDSFSYVEILNGKGNVVIKAMESKTIKGKKVRAQVAQ
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactagagtttaaagatttaggattaagtgaagaaattttagagtcaatagga
aagcttgggtacaaaacaccatcaagtattcaggaaaaagttatcccaataattcttaaa
aatagagatataattgcaaaagcaaaaacaggaagtggaaaaacagctgcttttgcaatt
ccaatatgtgaaaaaatagaattagaagaaaaggctccgcaggttttagttttaacacca
acacgtgaacttgcatatcagataaaagaagattttttaaacataggtaggtttaaaagg
ttaaggtgcgtaagtatttttggaaaagaacctatttcaaatcaaataagggagcttaag
cagagatgtcacattgtagttggaaccccaggtagaatattagatcatatagaaagagaa
accttaaatctttcaaagataaaatatgttgttatagatgaagcagatgaaatgcttaat
atgggatttatagaacaagtggaagggatactttcaaagcttgaaaagaatagaaatacc
cttcttttttcagctacacttccggaaaccatagtgaatttatctgagaaatacatgaaa
aacgctgaaaatgttgaggtgaaagatgaagcttcaagtaaaggtgaaattgaggagctt
tactataaggtagaggcaagagaaaagttttcgcttttagttaagcttatatataaagag
cttcccggcagttctattgtattctgtagaacaaaagataatgtggaagaggtatttggt
aaaatgaaggataaaggatttatatgtggtgcccttcatggtggtatgcttcagcaggat
agaatacaggttatgaatgactttaaaaaaggtaaatttacatttctagtagcaacagat
gtagctgcaaggggtattgatgttgaaaacataacacatgtcataaattacgatatacct
atggagaaggaaagttatattcatagaataggtagaactggacgtatgggaaacagagga
aaggctataacctttgttactatgaaggaagaaagatttctaaaagatattgaaaatgaa
ttttcgcgttatataaaagaaggaaatatgccaacaaaagaagaggttctaaagggaaga
gagactttaaaaagtacctctcaaaagctcaataaaacaaaacataataaaatagaaaaa
ttaaataaagatattacgaagcttcatttaagtgcaggaaagaaaaagaaaataagaccg
ggagatatagcgggaaccatatcaagcatagagggaataaagcctgaagacattggtata
attgatatacacgatagtttttcatatgtagaaatattaaatggtaagggaaatgttgtt
attaaggcaatggagagtaagactataaaaggcaaaaaagttagggcacaggtggcacag
aaataa
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