Clostridium felsineum DSM 794: CLFE_013900
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Entry
CLFE_013900 CDS
T08216
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLFE_013900 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfb03019
]
CLFE_013900 (recQ)
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_013900 (recQ)
Enzymes [BR:
cfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLFE_013900 (recQ)
Messenger RNA biogenesis [BR:
cfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLFE_013900 (recQ)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CLFE_013900 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
UPF0122
DNA_pol_B_3
Helicase_Sgs1
HTH_24
Motif
Other DBs
NCBI-ProteinID:
URZ15372
LinkDB
All DBs
Position
complement(1496711..1498852)
Genome browser
AA seq
713 aa
AA seq
DB search
MDNNIFNILKKYFGYSSFRQGQENIIQSIIDGHDTFAIMPTGGGKSICYQIPALYMNGLT
IVITPLISLMKDQVDTLRENGVNASYINSTLSQKETNDTLMSALSGHLKILYVAPERLEQ
EYFRNAIKDLPVAMVAVDEAHCVSQWGHDFRVSYKRIVPFITIFDKRPILAAFTATATDE
VKKDIINLLELREPNSFITGFDRDNLFFSIVKNENKFDFITKYLAKHKDVSGIIYAATRK
EVDSLHQKLLSQGYSVGKYHAGMSDNDRSKSQDLFLYDETKLMIATNAFGMGIDKSNVRF
VIHYNMPKNLESYYQEAGRAGRDGEKSECIILFSGQDIQIQKFLIRQSIPSFDRQRIEMK
KLNDMINYCMTTSCLRKYILNYFGEDYEVDNCDNCINCTGNVEIVDITLDAQKIISCIYR
MGQNFGVTMIAEVLKGSKNNKVLRFNFDKLSTYGIMKDYTLKQITNFINTLIADGYLYLS
DSEYPIVKMSKESIDVLKGSKKVVQKIHIVAELSLSTDNNLFEILKGLRLELSRKENVPP
YIIFSDAVLSEMCKYYPKDKISMLQIKGIGELKYNKYGEIFEKKIKEYIKETNLTPEDNK
ATLIVPEILSKKLSTHIETFNLYKKGLNLSEIAKTRNLSITTVQEHILKCANEGLNVNLD
SYIPEEYKDLIYEKIKTLGTSKLRPIKEALPDDVDYMAIKSAIFKYTSKNKAI
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggataacaacatatttaatatattaaaaaaatactttggctattcttcatttagacaa
ggtcaagaaaacataatacaaagtataatagatggtcatgatacctttgctattatgcca
actggaggcggtaaatctatctgttatcaaataccagccctctatatgaacggtcttaca
attgtaataactccacttatttcacttatgaaggatcaagttgataccttaagagaaaat
ggagttaatgctagttacataaatagcacattatcccaaaaagaaacaaacgatacttta
atgtcagcactttcaggacatttaaaaattttatatgtagcaccagaaagattagaacag
gaatactttagaaatgcaattaaagatttgcctgttgcaatggtggctgtagatgaagct
cactgtgtatctcaatggggacatgacttcagagttagttataaaagaatagttcctttt
ataactatatttgataaaagacctatcttagctgcttttactgcaactgcaactgatgaa
gtaaaaaaagatataataaatcttctagagcttagagagcccaattcttttatcactggc
tttgatagagataatttattcttttcaatagtaaaaaacgaaaacaaatttgattttata
accaaatatttagcaaaacataaagatgtttcaggtataatctacgctgcaactagaaag
gaagttgattctcttcatcaaaaactattgagtcaaggttattctgtaggaaaatatcat
gcgggtatgagcgacaatgatcgaagtaaaagtcaagatctatttttatacgatgaaaca
aaactgatgatagcaacaaacgcttttggtatgggtatagataaatcaaatgttcgtttt
gtaatacattataacatgcccaaaaacttagagtcttactatcaagaagccggtcgtgca
ggtagagatggtgaaaaaagtgaatgtataattttgtttagcggtcaagatatacaaata
caaaaatttctaataagacaaagtataccttcttttgatagacaaagaatagaaatgaaa
aaattaaatgacatgataaattattgcatgactacttcctgccttcgaaaatatatttta
aattattttggagaagattatgaggtggataattgtgataactgcattaattgtactggt
aacgtagaaatagtagatattacattagacgctcaaaaaataatttcctgcatctacaga
atgggacagaattttggggtaactatgatagctgaagttcttaaaggctctaaaaataat
aaagttttaaggtttaattttgataagttatctacttatggaataatgaaggactacact
ttaaaacaaattacaaactttataaatacacttatagcagatggttatttatatctttct
gatagtgaatatcccattgtaaaaatgtctaaagaaagtattgatgttcttaaaggctcc
aaaaaagtagtgcaaaaaattcatatcgtagcagaactttcactaagtactgataataat
ttattcgaaattttaaaaggtttgcgtctagagctttcaagaaaagaaaatgtacctcct
tatattattttttcagatgccgtattaagcgagatgtgtaaatactatccaaaagataag
atatccatgcttcaaattaagggtataggtgaattaaaatacaataaatatggcgagata
tttgagaaaaaaataaaggaatatattaaggaaacaaatttaactccagaagacaataaa
gctaccttaattgttcctgaaattctttccaaaaaattgtcaacccatatagaaactttt
aatctatataaaaaaggattgaatttatcggaaatagctaaaactcgaaacttatctatt
acaactgtgcaagagcatattttaaaatgcgcaaatgaaggtcttaatgttaatttagat
tcatacatccctgaagaatacaaggatttaatatatgaaaaaattaaaactcttggcacc
tctaaactaagacctataaaagaagccttgcctgatgatgttgactatatggcaataaaa
tctgcaatttttaaatatacttctaaaaataaggcaatataa
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