Clostridium felsineum DSM 794: CLFE_016280
Help
Entry
CLFE_016280 CDS
T08216
Symbol
yjcD
Name
(GenBank) Putative ATP-dependent DNA helicase YjcD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03420
Nucleotide excision repair
cfb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLFE_016280 (yjcD)
03430 Mismatch repair
CLFE_016280 (yjcD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_016280 (yjcD)
Enzymes [BR:
cfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLFE_016280 (yjcD)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLFE_016280 (yjcD)
MMR (mismatch excision repair)
Other MMR factors
CLFE_016280 (yjcD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
Viral_helicase1
UvrD_C_2
AAA_12
DEAD
ResIII
AAA_30
AAA_14
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
URZ15583
LinkDB
All DBs
Position
1724210..1726207
Genome browser
AA seq
665 aa
AA seq
DB search
MEYKLDDFQQKAVVTDEKNAIVIAAPGSGKTSVIINRVAYLIKVKNVSCDNIIVITFTKA
AAINMKQRYINYFNSRRTPFFGTFHSLFYKILLRHKGNIKIIDEFQKYNIVKSVLIKYMD
EVNEDKLREVINDISSFKSGEFDMENFKPQIDKKIFDECYEKYEQYKIENSLMDFDDLQI
QCMKMFEERPELLRGYSNLFKYVLVDEFQDSDTLQIRLLKMLSEKSSIYAVGDEDQCIYS
FRGSRPDCMVDFDKIFNKGKKFFLNTNYRSVSNIVKISKHLIENNEKRNSKNINANKVSD
GNINIINSKNENIEADKITIEIEKLKNISEYRYSDIAILYRTNVESRSLIDSFIRKNIPF
KFLDREYNFFEHFICKDISAYLKLSIDEFDRESFLRIINRPFRYISKINLQKVKNYRNRE
SVFDILKNLEDLPIFQIRDIEKLQEKIRSLNKMSLLSAVQFVISDLGYADYIQDYAIKRG
FNVEEMMDIIEEFKSSCEGYNNIIRFLAHIEEVKEKIKENKVDKNRDTVLLSTIHGVKGM
EFKNVFIVNCNEENIPHKNSIEENIEEERRLFYVGITRAIENLWISIVSELKGCERKPSR
FIKECKLNLNDFEGKYKKGEKVQHVSFGIGEILNIDDDVTEIKFQDSVRRFDTSVLLNAK
LMWKC
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggaatataaattagatgattttcaacaaaaagcagttgttacagatgagaaaaatgct
attgtcattgcagcccctggaagtggaaaaacaagtgtaataataaatagagtagcatat
cttatcaaggtgaaaaatgtatcctgtgataatattatagtaataacttttacaaaagcg
gctgccattaatatgaaacaaagatatataaattattttaatagcagaagaacgcctttt
tttggtacatttcatagtttattctataaaatattattaaggcataaaggaaatataaaa
ataatagatgagtttcaaaaatacaatatagtaaaatcagtacttataaaatatatggac
gaggtaaatgaggataagttaagagaagttataaatgatatatcaagttttaaaagtgga
gaatttgatatggaaaactttaaacctcaaatagataagaagatttttgatgagtgttat
gaaaaatatgaacagtataagatagaaaattcacttatggattttgatgatttgcaaata
cagtgtatgaaaatgtttgaggaaagaccagaacttcttcgtggttatagcaatttattc
aagtatgttttagtagatgaatttcaagattcggacacacttcaaataaggcttttaaaa
atgctaagtgaaaagagcagtatatacgcagttggagatgaagatcaatgtatatattct
tttagaggttcgagacctgattgtatggtggattttgataaaatttttaataagggaaag
aagtttttcttaaacacaaattatagaagtgttagtaatattgttaaaatatctaagcat
ttaatagaaaataatgaaaagagaaattcaaagaatataaatgctaataaagtcagtgac
ggaaatataaatataattaatagtaaaaatgaaaacatagaagcggacaagataacaata
gaaattgaaaagctcaaaaatatatcagaatatagatactcagatattgcaatattgtac
aggacaaatgttgaaagcagaagccttattgatagctttataagaaaaaatatacctttt
aaatttttggacagggaatacaatttttttgaacattttatatgtaaggacatatcagca
tacttaaaactaagcatagatgaatttgatagagaaagctttttaagaataataaatagg
ccttttaggtacataagtaagattaatctccaaaaagtaaagaattacagaaatagggag
agtgtttttgacatattaaaaaatttagaggatttacctatatttcaaatcagagatatc
gaaaagcttcaagaaaaaataagaagtctaaataaaatgtcacttttaagtgcagtacaa
tttgtgatttctgacttagggtatgcagattatattcaagattatgctataaaaagaggt
tttaatgtagaagaaatgatggacataattgaagaatttaaaagctcctgtgagggttat
aataacataattagatttttagcccatatagaagaggttaaggaaaaaataaaagaaaat
aaggttgataaaaatagggatacggtactattaagtacaattcatggcgtaaagggcatg
gaattcaaaaatgtattcatagtaaattgcaatgaagaaaatataccgcataaaaatagt
attgaagaaaatatagaagaagagagaagacttttttatgttggaataactagagctata
gaaaacttgtggatttctatagtaagcgaacttaaaggctgtgagcgtaagccatcaaga
tttattaaagaatgtaaactaaacttaaatgattttgaagggaaatataaaaaaggcgag
aaagtacagcatgtttcctttggaataggagaaattttaaacattgatgatgacgttaca
gaaataaagtttcaggatagtgtaagaagatttgatactagtgtgcttttaaatgctaaa
cttatgtggaaatgttag
DBGET
integrated database retrieval system
