Clostridium felsineum DSM 794: CLFE_016490
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Entry
CLFE_016490 CDS
T08216
Symbol
helD_1
Name
(GenBank) DNA helicase IV
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03420
Nucleotide excision repair
cfb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLFE_016490 (helD_1)
03430 Mismatch repair
CLFE_016490 (helD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_016490 (helD_1)
Enzymes [BR:
cfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLFE_016490 (helD_1)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CLFE_016490 (helD_1)
MMR (mismatch excision repair)
Other MMR factors
CLFE_016490 (helD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
DEAD
UvrD_C_2
AAA_30
ResIII
SLFN-g3_helicase
AAA_11
ATP-synt_F
NACHT
AAA_16
PF1197-like_C
Motif
Other DBs
NCBI-ProteinID:
URZ15604
LinkDB
All DBs
Position
1749297..1751588
Genome browser
AA seq
763 aa
AA seq
DB search
MLAIEKKEFEYEKDKLKDTEEWIENQISEIQKDNVEFQNKIGNLKKQSKGKYSEELEITE
KLYDITHKNLEKYSEAKLNPYFARIDFRERKRTEIESYYIGKFGLGDSKNGEEKIIDWRA
PIADLYYSGTAGKTSYKISSGYVDGELYLKRKFLLDGETLKDAFDDAINEIILKAQGGEE
NNLVDEFLKINLEKNVSSKLKDVVATIQKEQNDIIRSEKNSALVVQGSAGSGKTTVALHR
LAYLIYKYNKSLSGKDVLVVAPNKLFLDYISDVLPSLGANTVVQETFEDIALKVLGIKSR
VYTKDKKLAYIFEDKNEDDKKFVIEGSNFKGSLVFKDMIDEYLKTIEEKDAVVEDIKIDG
YVLFEKKEIERLFREDMAHLPIDERKDEIKRYFNLKIKDKIMSICDKISFTYEYSIARVK
RNMEDSVERRKKLIELYDDRDNKKNNIKKNASIAMDEYFENWKHTDTAVILDNFFNSQEV
YNNIIKGKISQRLFKYVKLEFNENRKKKIIDSDDLAAMLYVKFNIEGNNKFNFKHIIVDE
AQDYSIFQFAALKNLCSSNSFTIVGDLGQGIYYYKGINDWASINKNVFNDNFNYVALSQS
YRSTVEIIEFANKVLKKQNINLDPAKPVLRHGVKPEVIEFDTNKAFVEKSDEIVDKLEKL
NKKNIAIIGKTYDECKKINDALRKYSKHKWKVIKENDKSFETTRIVIPSYITKGLEFDCS
IIYNCSEDNYKNSELDKKILYVSLTRALHYEYIFYKGKKSKLI
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtgttggcaatagaaaaaaaagaatttgaatatgaaaaagataaattaaaggatactgaa
gagtggatagaaaatcagatatctgaaatacaaaaggataatgttgaatttcaaaataaa
ataggaaatctaaaaaaacaatcaaaaggtaagtatagtgaagaacttgaaataactgaa
aaactttacgatataacccacaaaaatcttgaaaaatatagtgaagcaaaattaaatcca
tattttgcaagaattgattttagagaaagaaaaagaactgaaattgagagctattatata
ggaaagtttggtttaggtgatagcaaaaacggagaagagaaaataatagactggagagca
cctattgcagatttatattatagtggtacagcaggcaaaacttcttacaaaatttcttca
ggatacgtagacggtgaactttatctcaagaggaagtttttactagatggcgaaacttta
aaggatgcttttgatgatgcaataaatgaaataattttaaaagctcaaggcggagaagag
aacaatctagttgatgaatttttgaaaataaatcttgagaagaatgtaagtagtaagtta
aaggatgtagttgctacaatacaaaaggaacaaaacgatataataagaagtgaaaagaat
tctgcacttgtagttcaagggtctgcaggttctggaaaaaccacggtagctcttcataga
cttgcatatcttatatataagtataataagtccttaagtggaaaggacgttctagttgtg
gcgcctaataagctttttttggattatatatcagatgtgcttcctagtcttggagcaaat
actgtagttcaagaaacctttgaagacatagcactgaaagttttaggaataaaatcaagg
gtatatacaaaggataaaaaacttgcatacatatttgaagataaaaatgaagatgataaa
aaatttgttatagaaggaagtaactttaaaggttctcttgtatttaaagatatgatagat
gaatatcttaaaacaatagaagaaaaggatgctgtagtagaagacataaaaattgatgga
tatgttttgtttgaaaagaaggaaattgaaaggctttttagagaagacatggcacatttg
cctatagacgaaagaaaagatgaaataaaaaggtattttaaccttaaaataaaagataaa
ataatgagcatttgtgataaaatttcatttacatatgaatacagtattgcaagagtcaaa
agaaatatggaagacagtgtagagagaagaaaaaaattaatagaactttacgatgataga
gataataaaaaaaataacataaagaaaaatgcatctatagcaatggatgaatattttgaa
aactggaaacatactgatacagcagtaattttagataacttttttaatagtcaagaagta
tataacaatattattaaaggaaaaatatcacaaaggctttttaagtatgttaaattagaa
tttaatgaaaacagaaaaaagaaaataattgatagcgatgatttagcagcaatgctctat
gttaagtttaatatagagggaaataataaatttaattttaagcatataatagtggatgaa
gcacaagattacagcatatttcaatttgcagcattaaaaaatctatgcagtagtaattct
tttacaatagttggtgatttaggtcaaggaatttattattataaaggaataaatgattgg
gcatcaataaataaaaatgtatttaatgataattttaactatgttgcacttagccaaagc
tatcgttcaacagtagaaataatagaatttgccaataaagttttgaaaaaacaaaatata
aatttagatccagcaaaaccggtgttaaggcatggagttaaaccagaggttatagaattt
gatactaataaagcatttgtagaaaagtcagatgaaattgtagataaacttgaaaaatta
aataaaaagaatatagccattataggtaagacatatgatgaatgtaaaaaaattaatgat
gctttaagaaagtatagtaagcataaatggaaagtaattaaagaaaatgataagagcttt
gaaactactagaatagtaataccttcatatataaccaagggattagaatttgattgtagt
ataatttataattgtagtgaagataattataagaattcagaacttgataaaaaaatattg
tatgtgtctcttacaagggcacttcattatgaatatatattttacaaaggaaaaaaatca
aagcttatttaa
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