Clostridium felsineum DSM 794: CLFE_019930
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Entry
CLFE_019930 CDS
T08216
Symbol
recJ_1
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03410
Base excision repair
cfb03430
Mismatch repair
cfb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CLFE_019930 (recJ_1)
03430 Mismatch repair
CLFE_019930 (recJ_1)
03440 Homologous recombination
CLFE_019930 (recJ_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_019930 (recJ_1)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CLFE_019930 (recJ_1)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CLFE_019930 (recJ_1)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CLFE_019930 (recJ_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
HA70_C
Motif
Other DBs
NCBI-ProteinID:
URZ15946
LinkDB
All DBs
Position
2106604..2108367
Genome browser
AA seq
587 aa
AA seq
DB search
MEKWFIKNIRADYKAISKSFGINEVIGKLLVNRGIIDNTLIRSFLNPKFEKMHDSKKMKD
AEKASLILKDKIEKKRKIRIIGDYDVDGVISTYLLFTALKRCGADVDYDIPDRVKDGYGI
NKNIIDKCIMDSVNTIITCDNGISAIEPINYAKEANITVIVTDHHDIPFVENEKGERTFV
SSNADAIVNPKQIECAYPFKSLCGAGVVFKLIEILYAEFKIHKEECYNLSQFVAIATVCD
VVDLVDENRIFVKNGLELLNNTRNIGLRALIRQTAIDDKKISTYHLGFVIGPCINATGRL
DTAKRGLQLLVTENENEAVRLSKELFDFNNERKEMTQKGVESAINIIENTNMTKDKVFVV
YVPEVHESIVGIVAGRIREKYNVPTIVLTKTENGAKGSGRSIEGYNMFEELMKCKDILLN
FGGHPMAAGLSLEENNINNLREQLNFNTKLTDEDLIPKITLDMGMPLEHISYDFVKDLSI
LEPFGKANPKPIFGEKKANIVSAKVIGQNHNVLKIKFFSKNRRYIDGIFFGDIEEFQRLV
IDRYGTAELNKMYSGIENNVNLDIAFYPDINEYNGNVSVQIVVQYFR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaatggtttataaaaaacataagagcagactataaagcaatttctaaaagtttt
ggaataaatgaagtaataggaaagcttcttgttaataggggaattatagataatacatta
ataagaagttttttgaatcctaagtttgaaaaaatgcatgattcaaaaaaaatgaaggat
gctgaaaaagctagcttaattttaaaggataaaatagagaaaaaaagaaaaataagaatt
ataggagattatgatgtagatggagttataagtacatatttactttttacagctttaaaa
agatgtggtgcagatgttgattacgatataccagatagagtcaaggatggttatggaata
aataaaaatataatagataaatgtataatggattcggttaatactataataacttgtgat
aacggaatttcagcaatagaaccaataaattatgcaaaggaagctaatattacagttata
gttactgatcatcatgatataccttttgtagaaaatgagaagggtgaaagaacctttgta
agttcaaatgcagatgctatagtaaatcctaaacaaattgaatgtgcatatccatttaaa
agcctatgtggagcaggggttgtttttaaacttatagaaattttgtatgctgaatttaaa
atacataaagaagagtgttataatttatcacaatttgtagcaattgctacagtatgcgat
gttgttgatttagtagatgaaaatagaatttttgttaaaaatggattagaactacttaat
aatactagaaatataggcctgagagcacttataagacaaacagccatagatgataaaaag
atctctacatatcatcttggatttgtaataggtccatgtataaatgctacaggtagactt
gatacagctaaaagaggtcttcaattattagtaactgaaaatgaaaatgaggcggtaagg
ctttcaaaagaattatttgattttaacaatgagagaaaagaaatgacacaaaagggtgta
gaaagtgctataaatataattgaaaacacaaacatgacaaaagataaagtttttgtggtt
tatgtacctgaagtccatgaaagtatagttggaatagttgctggtaggataagagaaaaa
tataatgtaccaactatagtgcttacaaaaactgagaatggtgcaaagggatcaggaaga
tctatagagggatataatatgtttgaagaattaatgaaatgtaaggacatattattaaat
tttggaggacatcctatggctgccggactatcccttgaagaaaataacataaataattta
agagaacagttaaactttaatactaaattgactgatgaggacttaatacctaaaataaca
cttgatatgggaatgccacttgaacatataagttacgattttgttaaggatttaagtata
ctagaaccttttggaaaagctaatcccaaacctatttttggagaaaaaaaagcaaatata
gttagtgcaaaagtaataggacaaaatcataatgtcttaaaaataaaatttttttctaaa
aacagaagatatatagatggaatattttttggagatatagaggagtttcaaagattagta
atagataggtatggtactgcagaattaaataaaatgtatagtggtattgaaaataatgtt
aatttggatatagcattttatccagatataaatgaatataatggaaatgtaagtgttcaa
atagtagtacaatattttaggtag
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