Clostridium felsineum DSM 794: CLFE_022690
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Entry
CLFE_022690 CDS
T08216
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cfb
Clostridium felsineum DSM 794
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfb03032
]
CLFE_022690 (topA)
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_022690 (topA)
Enzymes [BR:
cfb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CLFE_022690 (topA)
DNA replication proteins [BR:
cfb03032
]
Prokaryotic type
DNA Topoisomerases
CLFE_022690 (topA)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CLFE_022690 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
HVO_2753_ZBP
DmmA-like_C
Toprim_4
HypA
Ogr_Delta
Mre11_C
zf_Rg
Zn_ribbon_RPB9
ZNF512_C2HC
Motif
Other DBs
NCBI-ProteinID:
URZ16222
LinkDB
All DBs
Position
2389767..2391860
Genome browser
AA seq
697 aa
AA seq
DB search
MGHKLVIVESPAKAKTIGKYLGKNYIVEASMGHVRDLPKSTLGVDIDDNYNPKYITIRGK
GELLDKLKKAAKKCDKVYLATDPDREGEAISWHLSKVLKIDENEKCRIEFNEITKNAIKS
AIKTPREINVNLVDAQQARRVLDRLVGYKISPILWRKVKWGLSAGRVQSVALKMICNKEK
LINDFKPEEYWSIDASVYKDSKKDKFTIKLTSFKGKKLKIGNKEENEQIISAIKKNKFKV
ENVKEGTKNKNTLPPFTTSTLQQDANKKLNFSTKKTMSVAQQLYEGVDVKGHGTIGLITY
MRTDSVRISKEAQDAAADFITKEYGKEYLPANPKQYKSKKNIQDAHEAIRPTYIELTPSM
VKASLKDDQFKLYNLIWSRFMASQMANCILNTLSIEITNGDYTFRASGSNIKFEGFMKIY
KYNIEEEEDNEKIPVLQKGDLLNVDNVDGKQHFTQPPARFTEASLVKTLEENGIGRPSTY
APIISTLIDRKYVKKEKKAIYLTELGSIVDNILSDYFKQIIDVEFTADMENKLDNVEEGK
ENWKEIVDEYFKPLKEAIEIAEKEVAKITIEDEVTDIKCDKCGRNMVIKHGRFGDFLACP
GYPDCKNTKPIVEKLEVKCPKCGGDVIIRRSKKGRKFFGCSNYPKCDFVSWFEPVEDKCP
ECGSFMVKKSSKSKGDYLQCSNTECKYEKTNPTPDKK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgggacataaactagtaatagtggaatctccagctaaagccaagactataggtaaatat
ctggggaaaaattacattgtggaagcatcaatggggcacgttagagatcttcctaaaagt
actttaggagtagatatagatgataattataatcctaaatatataacaattagaggaaag
ggtgagcttttagataaactaaaaaaagcagctaaaaaatgcgataaagtatatcttgct
actgaccctgatagggaaggcgaagctatttcttggcatctttcaaaggtccttaaaata
gatgaaaatgaaaagtgtagaatagaattcaatgaaataactaaaaatgctataaaaagt
gccataaaaactccaagagaaataaatgttaatcttgtagatgctcaacaagcaagaagg
gttttagatagattagttggctataaaataagtccaattctatggcgaaaagtaaagtgg
ggattaagtgccggtagagttcaatctgttgcgcttaaaatgatatgcaataaagaaaaa
cttataaatgattttaaacctgaagagtattggagtatagatgcttcagtatataaagat
tctaagaaggataaatttacaataaaattaacttcatttaaaggtaaaaagttaaaaata
ggcaataaggaagaaaatgaacaaataataagtgctataaagaaaaataaatttaaagtt
gaaaatgtaaaggaaggtacaaagaataaaaatactttgccaccatttacaacaagtaca
cttcaacaagatgcaaataaaaaactaaatttttcaactaaaaagacaatgtcagtagct
caacaattgtatgaaggagtagatgttaaaggacatggtacaataggtcttattacgtac
atgagaactgattctgttaggatttcaaaagaagcacaagatgctgctgctgatttcata
actaaagaatatggtaaggaatacttgccagcaaacccaaaacaatataaaagtaaaaaa
aatattcaagatgctcatgaagcaatcagaccaacatatatagagcttactccaagtatg
gttaaagccagcctaaaggatgatcaatttaaactatacaatttaatatggtcaagattt
atggcaagccaaatggcaaattgcattttaaacaccctttctattgaaataacaaatggt
gactatacttttagagcttctggaagtaatattaaatttgaaggttttatgaaaatatac
aaatataatattgaagaagaagaagataacgaaaagatacctgtattacaaaagggggac
ttattaaatgtagataatgttgatggtaaacagcattttactcagccaccagcaagattt
actgaagcatccttagtaaaaacattagaggaaaatggaataggaagacctagtacgtat
gctcctataatttcaacacttattgacagaaagtatgttaaaaaggaaaagaaagctata
tatttgactgagttgggaagtatagttgataatatattgagtgattattttaaacaaatt
atagacgttgaatttactgctgatatggaaaataaactagacaacgttgaagaaggcaaa
gaaaattggaaagaaatagttgatgagtactttaaaccgctaaaagaggcaattgaaatt
gccgaaaaagaagtggctaaaataaccattgaagatgaagtcacagatataaaatgtgat
aaatgcggaagaaatatggttattaaacacggtaggtttggggactttttggcatgtcca
gggtatcctgattgcaaaaatacaaaacctattgtagaaaaattagaagtaaaatgtcct
aaatgtggtggagatgtaattatacgaagaagcaaaaagggaagaaaattttttggttgt
agtaactatccaaagtgtgactttgtaagctggtttgaaccggtagaggataaatgtcct
gaatgtggaagctttatggttaaaaaatcaagtaaatctaagggtgattatttacaatgt
tctaatacagaatgtaaatatgaaaagacaaatcctaccccagataaaaaataa
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