Clostridium felsineum DSM 794: CLFE_022920
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Entry
CLFE_022920 CDS
T08216
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLFE_022920 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfb03019
]
CLFE_022920 (pnp)
03016 Transfer RNA biogenesis [BR:
cfb03016
]
CLFE_022920 (pnp)
Enzymes [BR:
cfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CLFE_022920 (pnp)
Messenger RNA biogenesis [BR:
cfb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLFE_022920 (pnp)
Transfer RNA biogenesis [BR:
cfb03016
]
Prokaryotic type
tRNA degradation factors
CLFE_022920 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
PCB_OB
KH_2
MUG2_C
Motif
Other DBs
NCBI-ProteinID:
URZ16245
LinkDB
All DBs
Position
2411693..2413804
Genome browser
AA seq
703 aa
AA seq
DB search
MSHVLETDIAGRKLKVESGKTGMLSNCAMFISYGDTVVMVNVNASEKPRDGIDFFPLSIE
YEERQYSVGKIPGGFVKREGRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQ
DNLPEILAMNGASLALCLSDIPFTIPVATVSVGLIDGNFILNPTLEERTKSSLDLTVCAT
KERVMMLEAGAEEIPEDVMISAINFGFEACQDIVAFQEKAMKEFGKQKVTPELYHPKEEI
EKDVTEFAFDDIKEIMYITDRDERNLKLKEIKQKISDEFAEKYPDDAADIDEIVYRLQKK
VVRNMLLKERRRPDGRKFDQIRNISCDVDILPRTHGSGLFTRGLTQVMTVTTLGPIGDAQ
VIDGLGVEESKRYMHHYNFPPYSTGEVKPLRGPNRREIGHGALAEKALVPLIPSEEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSEEAVITDI
QGLEDFFGDMDFKVAGTEKGITAIQVDTKIHGLSKTCIRDAIIDARKARLFILEKMTACI
PEPKKELSLYAPRAYTINIDTDKIRTLIGTGGKTINKIIEETGVKIDIREDGTVFVLSSD
ADSANRALKMIDNLTKDVKVGEIYLGKVTKTTNFGAFVEVLPGKEGLVHISKLDIAKVNK
VEDVVSVGDEILVKVTDIDNQGRVNLSRKDVLKQQEEDNAKEK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgtcacatgttttagaaacagatattgctggcagaaaattaaaagtggaaagtggcaaa
actggtatgctttcaaattgtgccatgtttataagttatggcgatactgttgtaatggtt
aatgttaatgcctcagaaaaaccaagagatggtatcgatttttttcctttaagtattgaa
tatgaagaaagacaatattctgtaggaaaaataccaggagggtttgtaaaaagggaaggt
cgtccttctgaaaagtctattttacatgcaagagcaatagatagacctctaagaccatta
tttcctaagggatatagaaatgatgttcaggtagtatgtactgttatgtctgttgaacag
gacaatttgccagaaatacttgctatgaatggagcatctttagctttatgcttatctgat
attccatttacaattcctgttgctacagtatctgtaggattaattgatggcaattttatt
ttgaatcctacattagaagaaagaacaaaaagttctcttgatttgactgtttgtgcaaca
aaagaaagagtaatgatgctagaggcaggagcagaagaaattccagaagatgttatgata
tctgctataaattttggatttgaggcttgtcaagatatagttgcttttcaagaaaaggca
atgaaggagtttggtaaacaaaaggttacccctgagttatatcatcctaaagaagaaatt
gaaaaagatgttactgaatttgcttttgatgatattaaggaaattatgtacataacggat
agggatgagagaaatttaaaattaaaggaaataaaacaaaaaatatctgatgaatttgct
gagaagtatcctgatgatgcagcggatatagatgaaattgtttatagacttcagaaaaag
gttgttagaaatatgcttttaaaagagcgtagaagaccggatggaagaaaatttgatcag
ataagaaatataagttgtgatgttgatatattgcctagaactcatggaagtgggttattt
acaagaggtttaacacaagttatgacagttacaactctaggtccaataggagatgctcaa
gtaatagatggattaggagtagaagaatctaaaaggtatatgcaccactataattttcct
ccatattctacaggtgaagttaaaccactaagaggaccaaatagaagagagattggtcat
ggagctcttgcggaaaaagcgttggtaccacttataccatctgaagaggaattcccttat
acaataagacttgtatcagaggttttgagttctaatggatctacttcacaagccagcgtg
tgtggaagcactttagcattaatggatgcgggtgtaccaataaaaagaccagctgctggt
atagctatgggacttataactagtgaagatctttctgaagaagctgttattactgatata
caaggtttagaagatttctttggtgatatggattttaaggtagctggtacagaaaaaggt
ataacagcaattcaagtagatactaaaattcatggattatcaaaaacttgcataagagat
gctataattgatgcgagaaaagcaagattattcatacttgaaaaaatgactgcatgcata
ccggaacctaaaaaagaattatcactatatgctccaagagcgtatactataaatatagat
acagataaaataagaactctcattggaactggtggaaaaacaattaataaaataattgaa
gaaactggtgttaaaatagatatcagagaagatggaactgtatttgttctatcaagtgat
gctgattcagcaaatagagctttaaaaatgatagataaccttactaaagatgttaaggta
ggagaaatttatttgggtaaagtaactaagactactaactttggagcatttgttgaagtt
ctcccaggtaaagaaggtcttgtccatatatctaagctggatatagctaaggtaaataag
gtagaggacgtagtttctgtaggtgatgaaatattagttaaagttactgatatagataat
caaggaagagtaaatttatcaagaaaagatgttttgaaacaacaagaagaagataacgct
aaagaaaaataa
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