Clostridium felsineum DSM 794: CLFE_036160
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Entry
CLFE_036160 CDS
T08216
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cfb
Clostridium felsineum DSM 794
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfb03016
]
CLFE_036160
Enzymes [BR:
cfb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CLFE_036160
Transfer RNA biogenesis [BR:
cfb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CLFE_036160
Prokaryotic type
tRNA splicing ligases
CLFE_036160
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
WCX
Motif
Other DBs
NCBI-ProteinID:
URZ17563
LinkDB
All DBs
Position
complement(3846245..3848500)
Genome browser
AA seq
751 aa
AA seq
DB search
MELFDERKNRYMHIVFKVLNECKRGIFKQDIIKIIDEEEFEEKVIGNDQKSFEGLLLNKY
SNSENFNLLKEKNGVYYPNIKIDKAIPVRFTNLEKAWLKNMLEHKDIKNILRSSTIEKLK
NAICDVDAPIINEIVHITNQSKAYSVKSTEEFEENFRKLLKAISEEKSVRYRGMNKYGNG
YFDKSAFPIRLEYSLRDERFRVSMYSTDENRFVMSDIFSMSDIKIYENINSNIKREDILK
KLRSQKYSKEPIIMEVIDKKFAMERCFMSFSELERYSRCISKDKYELKLFYYTFEEEEII
RKILALGPYVKVLEPEKIRNEIIRRIRVALDINGFNVCRKDDNKMIEVKGKYNTARVYTS
KLEPEVVAQIVELCNQDFCKNSKIVIMPDTHAGKGCVIGFTADLGDKVIPNIVGVDIGCG
MTTIELGKINIDLEKLDEIIRKYVPSGMSVHEGRSVKFNELKELYCYRDLKNTKRIEKSI
GTLGGGNHFIELNKDDEDNIYLVIHSGSRNLGKQVAEIYQNIAIDLCSGKEDYFKEKDKL
IEEYKRQGKRKLIEAKLKELKKEYDDMKPSYPKELCFLTGKYREKYLNDMNICQEYAALN
RETMADIILKKLMGKSLKDFSYFNTVHNYINFKDNIIRKGSISAYKDEKLLIPINMRDGS
ILAFGKGNADWNYSAPHGAGRLMSRNRAKAELSLEEFKKSMEGIYTTSINYSTLDEAPMA
YKPIEEIIENIKDSVEVYKILKPIYNFKASN
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggagctctttgatgaaagaaaaaatagatacatgcatattgtatttaaagtacttaat
gagtgtaaaagaggaatatttaaacaagatataattaaaataattgatgaagaagaattt
gaagaaaaagttataggaaatgatcaaaagagttttgaagggcttctccttaataaatat
tctaatagtgagaattttaatctgcttaaagaaaaaaacggtgtttattatcccaatata
aaaatagataaagctatacctgttagatttacaaatttagaaaaggcgtggcttaaaaat
atgctagagcataaagatataaaaaatattttaagaagttctacaatagaaaagcttaaa
aatgctatttgtgatgttgatgcacctataataaatgaaattgtccatataactaaccaa
tctaaggcatatagtgttaaaagcactgaagaatttgaagaaaatttcaggaaactttta
aaggcaatttcagaagaaaaaagtgtaaggtacaggggcatgaataaatatgggaatgga
tattttgataaaagtgcttttcctataagactagagtattcacttagggatgaaaggttc
agagtttcaatgtattctacagatgaaaatagatttgtaatgtctgatatttttagtatg
agtgatattaaaatatatgaaaatatcaattctaatataaaaagagaagatattttaaag
aaattgcgatctcaaaaatattctaaagaacctattattatggaagttattgataaaaaa
tttgctatggaaagatgtttcatgagcttttcagaattggagaggtattcaaggtgcatt
tcaaaagataaatatgaattgaaacttttttattacacttttgaggaagaagaaataata
agaaaaatattagctttaggaccgtatgttaaggtattagaacctgaaaaaataagaaac
gaaataataaggagaataagggttgctctcgatataaatggatttaatgtttgtagaaag
gatgataacaagatgatagaagtaaaaggaaaatataatacagctagagtttatacaagt
aaattagagccagaagtagtggcacagatcgttgaactatgtaatcaagacttttgtaag
aatagtaaaattgtgataatgccagatactcatgcaggtaaaggctgcgttataggtttt
actgctgatttaggtgataaggttattcctaacatagtaggagtagatataggttgtgga
atgacaacaattgagcttggaaaaattaatatagatttagaaaagctagacgagattatt
agaaaatatgtaccttcaggaatgtcagtacatgaggggagaagtgttaagtttaatgaa
cttaaagaattatactgttacagggatttaaagaatacaaaaagaattgaaaaaagtatt
ggtactttaggcggaggaaatcactttattgaacttaataaggatgatgaagataatata
tatcttgtaattcattcaggaagtagaaatttaggtaagcaagttgcagagatatatcaa
aatattgccattgatttatgttctggtaaagaagattatttcaaggaaaaagataagctt
atagaagaatacaaaagacaagggaaaagaaaacttatagaagctaaattaaaagaacta
aaaaaagagtatgatgatatgaagccatcatacccaaaagagttatgttttttgacagga
aaatatagagaaaaatatttaaatgatatgaatatatgtcaagaatacgctgcattaaat
agagaaactatggcagatataatattaaaaaagttaatgggaaaaagtcttaaagacttt
agttattttaatacagtgcataattacataaatttcaaggataacataataagaaaagga
agtatttcagcatataaggatgaaaaacttttaattcctataaatatgagagatggaagt
atattagcttttggaaaaggtaacgctgattggaattactctgcgccacatggtgctggc
agacttatgagtagaaatagggcaaaagcagaattaagtttagaggaatttaaaaaatca
atggaaggaatttatactacatcgattaattattctacattggatgaagcacctatggca
tataaaccaatagaagaaattatagaaaatattaaagattcagtagaagtatataaaatt
ttaaaacctatttataactttaaagctagcaattag
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