Clostridium felsineum DSM 794: CLFE_036610
Help
Entry
CLFE_036610 CDS
T08216
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb02020
Two-component system
cfb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CLFE_036610 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CLFE_036610 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfb03021
]
CLFE_036610 (rpoN)
Transcription machinery [BR:
cfb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CLFE_036610 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
BORCS8
Sigma70_r4_2
HTH_12
HTH_11
HTH_23
HTH_26
HTH_Tnp_Tc3_2
HTH_IclR
HTH_17
HTH_36
MarR
Sigma70_r4
HTH_21
Fe_dep_repress
HTH_28
HTH_10
HTH_5
HTH_27
DUF4158
HTH_20
MarR_2
Motif
Other DBs
NCBI-ProteinID:
URZ17608
LinkDB
All DBs
Position
complement(3903820..3905211)
Genome browser
AA seq
463 aa
AA seq
DB search
MNLNFELNLTQQQKLVMTQQMQMSIKLLQMSNIELNDYIKRELEENPLLEGKERQNDKEY
RSDMSKVDYKEFIKYLDFDNYTHENYHYRNEEEEVSPFNFIGNKKSFTEYLLDQLGEISI
DRYTRPICEYIIENLNSNGYLPDTIEDISQDLHKNLKSVEKALEIVQSLDPSGVGARDIS
ECLKLQIKRKNVNDITLMEIVDKHLADIAENKYSLMAKELNIDPKEAQEYGDYIKSLEPK
PSRGFYTGDEVKYVVPDAFIRKIDNDFYVIMNDSSLPKLSINSTYKNILNNENDKKDVEY
VKEKLNSAMFLLKSIEQRKSTLYEVLNEILKYQNDYFNGITNYLKPMTLKDISEKLEIHE
STVSRAIREKYVYVDTKGLLKIRDMFTTGISTSVNQANKEDLSTQKIKNEIKELIAKEEK
ESPLSDQKISEVLKEKGMNISRRTVAKYREEIGIKSSAKRKRY
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaatttgaattttgaattgaatttaactcagcagcaaaaactagtaatgactcaacaa
atgcagatgtcaattaaacttcttcaaatgtctaatatagaattaaatgattatataaag
agagaattagaggaaaaccctcttttagaaggaaaagagcgacaaaatgataaggaatat
aggtcggacatgagtaaagtagattataaagagtttataaaatatcttgattttgataac
tatactcatgaaaattatcactatagaaatgaagaggaggaggtatcgccttttaatttt
atcggaaataaaaagtcatttacagagtatttattagatcagcttggggaaatcagtata
gaccgatatactagacctatatgtgagtatataatagaaaatctaaatagtaacggatat
ttaccagatacaatagaagacatatcacaggatttacacaaaaatttaaaaagtgtggaa
aaggcacttgagatagtacaatccttagatcctagcggtgtaggtgctagagatatatca
gaatgtttaaaattacagattaaaagaaaaaatgtaaacgatattaccttaatggaaata
gtggataagcatttagctgatatagctgaaaataagtatagtttaatggctaaggagcta
aatatagaccctaaagaagcacaagaatatggagattatataaaaagtcttgaacctaaa
ccatcaagaggtttctacacaggggatgaagttaaatatgtagttccagacgcatttata
agaaaaatagacaatgatttttatgtaataatgaatgatagttcacttcctaaattatcg
ataaatagtacttataaaaatattttaaataatgaaaatgataaaaaggatgttgaatat
gtaaaagaaaagcttaatagtgctatgtttttgcttaaaagtatagaacaaagaaaaagt
acattatatgaggttttaaatgaaatattgaaataccaaaatgattattttaatggaata
actaattatttaaaaccaatgacacttaaagatatttctgagaaattagagattcatgaa
tctactgtaagtagagctataagagaaaagtatgtttatgttgatacaaaaggtctatta
aaaataagggacatgtttactacgggaatatcaacatcagttaatcaagctaataaagaa
gatttatcaacacagaaaataaaaaatgaaattaaagaattgattgcaaaggaagagaaa
gaaagtcctctgtcagatcagaaaatttcagaagttttaaaggaaaaaggtatgaatatt
tcgagaagaactgtagcaaaatatagagaagagataggaataaaatcatctgctaaaagg
aaacgttattaa
DBGET
integrated database retrieval system
