Clostridium felsineum DSM 794: CLFE_039860
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Entry
CLFE_039860 CDS
T08216
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cfb
Clostridium felsineum DSM 794
Pathway
cfb03030
DNA replication
cfb03430
Mismatch repair
cfb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cfb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CLFE_039860 (dnaE)
03430 Mismatch repair
CLFE_039860 (dnaE)
03440 Homologous recombination
CLFE_039860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfb03032
]
CLFE_039860 (dnaE)
03400 DNA repair and recombination proteins [BR:
cfb03400
]
CLFE_039860 (dnaE)
Enzymes [BR:
cfb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CLFE_039860 (dnaE)
DNA replication proteins [BR:
cfb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CLFE_039860 (dnaE)
DNA repair and recombination proteins [BR:
cfb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CLFE_039860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF6282
Motif
Other DBs
NCBI-ProteinID:
URZ17931
LinkDB
All DBs
Position
complement(4263455..4266946)
Genome browser
AA seq
1163 aa
AA seq
DB search
MEAEFKDFVHLHVHTEYSLLDGSGKVKKLVKRAKELGMKSIAITDHGAMYGCVEFYKAAK
EVGIKPIIGCEIYVAGKSMHIKHPDAENETYHLVLLVKNEVGYKNLMEIVSKASIDGFYY
KPRVDHDYLMSHSEGLIASSACFGGEVQSYILKDNLERAKKAALFYKETFKEGFYLELQY
HALKNDMKVNDALVEMSKELDIPLIATNDVHYINKEDSIAHDVLLCIQTGKTVDEENRMR
YAPEQFYLKSQEEMYEQFSYVKDALLNTSKIADQCNFEYKFHESKLPNFPLKEGIDHYEY
LKDLCYEGLRERYKDITDTIIERLEYELGIIKEMGYVDYFLIVWDFIKFARENGVPTGPG
RGSAAGSIVAYTLGITKIDPIKYSLIFERFLNPDRVSMPDIDSDFCYENRQKVIDYVVEK
YGKDSVSQIVTFGTMAARLCIRDVGRAMNYSYGEVDRIAKMIPNVLNITIDKALEMNPEL
KAVYDDDERIKDLIDISRKLEGLPRHTSTHAAGVVIASQPLVNYVPLLKNEESIVAQFTM
GILEELGLLKMDFLGLRTLTVINDTIKMVKQNRNIDIDIDSIDFDDAGVYKMIGEGKTVG
VFQLESAGMTSFMKELKPDSLEDIIAGISLYRPGPMNEIPRYIRNKNNPEEIKYVTPELK
HILDVTYGCIIYQEQVMQIVRDLAGYSMGRSDLVRRAMSKKKHHVMEEERHNFIHGVVDE
NGKVEVPGCIKNGISEKIANEIFDSMMDFASYAFNKSHAAAYAVVAYETAYLIHYYPAEY
LAAMLNSVMGNNEKVAFYIRCAEELKIQVLPPDINESYSRFTVKGDTIRFGLAAIKNVGV
NVIESIVRSRQKKGSFNSFTDFCNKIDTSEVNKRAVESIIKAGGFDTLEIYRSQLLAVFE
KIMDGISGQRKKNIKGQMNLFTDFAQDEYEEVEIQYPDIKEFDKKYLLAMEKEMTGLYLS
GHPLEDYEETLKNMTSIKISDIVAEQSLEDDEIKVDETSGIEDGTRVIIGGIISSVTKKI
TKSNTMMAFIRVEDMYASIEVVIFPKILEKNSTYIKEDEMVIIKGRINKREDEQPKVICE
EIMPIVKSTEKIYILVEDDAAVKNSIKEIKKMLALYTGDTPIYMCTRKERKKFLIDRALW
VQKEVDLIKFLTDKFGESNVKVL
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgaatttaaagattttgttcatcttcatgtccataccgaatacagtctcctt
gatggttccggtaaggttaaaaaactagttaagcgtgcaaaagagctcggcatgaaaagt
attgcaataacggaccatggtgcaatgtatggatgtgtggagttttataaggccgcaaaa
gaagtaggcataaaacctataatagggtgtgaaatttatgtggcaggtaagtctatgcat
ataaagcatcctgatgctgaaaatgaaacctatcatttggttttgcttgttaagaatgaa
gttggctacaaaaatttaatggagatagtatctaaggcatctattgacggtttttattac
aaaccaagagtagatcatgattatttaatgagtcatagtgaaggactgatagcttcaagt
gcgtgttttggaggagaggttcaatcttatatattaaaagataatcttgaacgtgcaaaa
aaggcagcacttttttataaggaaactttcaaagaaggcttttacttagaacttcaatat
catgcacttaagaatgatatgaaggttaatgatgctttagtagaaatgtcaaaagagctt
gatataccactgatagctactaatgatgttcattacataaataaagaagattctatagca
catgatgtacttttatgtatacaaacaggtaagactgttgatgaagaaaatagaatgagg
tatgctcctgagcaattttatcttaaaagtcaagaggaaatgtacgaacagttttcttat
gtaaaagatgcattactcaatacttctaaaatagctgatcaatgtaattttgaatataaa
tttcatgaatcaaagcttccaaattttcctcttaaagaaggaatagatcactatgagtac
ctaaaggacttatgttatgaaggcttaagagaaagatataaggatattacagataccatt
atagaaagactagaatatgagcttggcataataaaagaaatgggatatgtagattacttt
ttaatagtttgggattttattaagtttgcaagagaaaatggagtgccaactggaccaggt
agagggtctgctgcgggatcaattgttgcatatactcttggaataaccaagatcgaccca
attaagtatagtcttatttttgaaagatttttaaacccagacagagtttctatgcctgat
attgatagtgatttttgctatgaaaatcgccaaaaggtaatagattatgtggttgaaaag
tatggtaaagattctgtttctcaaattgtaacctttggaacaatggcagcaagactttgt
ataagagacgttggaagagctatgaattattcttatggtgaggttgatagaatagctaaa
atgattcctaatgttctaaatataactattgataaggctctagagatgaacccagagctt
aaagctgtatatgatgatgatgagagaataaaggatttaatagatatatcaagaaagcta
gaagggcttccaaggcatacctcaactcatgctgctggagttgtaatagcttcccagcca
cttgtaaattatgttccgcttttgaaaaatgaggaatctatagtagctcaatttactatg
ggcatacttgaagaacttggacttttaaagatggacttcttaggtttaagaactcttaca
gttatcaatgacacaataaaaatggttaaacaaaatagaaatatagatatagacatcgat
agcatagattttgatgatgctggcgtatataagatgatcggtgaaggtaaaactgtagga
gtatttcagcttgaatctgcaggtatgactagttttatgaaagaacttaagccagatagt
ttagaggatataatagcgggaataagtctttatagaccaggtcctatgaatgaaatacca
agatatataagaaacaaaaataatcctgaagaaataaaatatgttactccagagcttaaa
catattttagatgtaacttatggatgtataatatatcaagaacaggtaatgcagatagta
agggacttagcagggtactcaatgggaagaagtgaccttgtaagacgtgctatgtctaag
aaaaagcatcatgttatggaagaagaaagacataactttatacatggagttgttgatgaa
aatggtaaagtagaagtaccaggatgtataaaaaatggaatttctgaaaaaatagctaat
gagatatttgattccatgatggattttgcaagttatgctttcaacaaatcacatgcggct
gcctatgcagtggttgcctatgaaacagcgtatttaattcattattatccagcagaatat
ttagcagctatgcttaacagtgttatgggtaacaatgaaaaagtagctttttatataagg
tgtgcagaggaattaaaaatacaggttttacctccagacataaatgaaagttattcaaga
tttacagtaaagggggataccataaggtttggtcttgctgctattaaaaatgtaggagtt
aatgtaatagagagcatagtaagatcaagacagaaaaagggtagttttaattcctttacg
gatttttgtaataaaattgatacctcagaggtaaacaaaagagcagttgagagtataata
aaagcaggagggttcgatacacttgaaatttataggtcacaacttcttgctgtgtttgaa
aaaataatggatggaatttcagggcagagaaagaaaaatataaaaggtcagatgaattta
tttacggactttgcacaagatgagtacgaagaagttgaaattcagtatccagatataaaa
gaatttgataaaaagtatttacttgcaatggagaaggaaatgacaggattatatctttca
ggtcatccccttgaagattatgaggaaactttgaaaaatatgaccagcataaaaatatca
gatatagtggcagaacaatccttagaagatgatgagataaaggtagatgaaacttcagga
attgaagatggaacaagagttataatcggtggaataataagttctgtaactaaaaaaatt
actaaaagtaatacaatgatggcattcataagagtagaagacatgtatgcttcaatagag
gttgttatatttcctaaaatactagaaaaaaattctacctacataaaggaagacgaaatg
gtgataataaaaggtagaataaacaaaagagaagatgagcagcctaaagtaatatgtgaa
gaaataatgccaattgttaaaagtacagaaaaaatatatatacttgttgaagatgatgct
gctgttaaaaattcaataaaagaaataaaaaaaatgcttgctttatatactggagatacc
ccaatatatatgtgcacaaggaaagaaagaaaaaagtttcttatagatagagctctttgg
gttcaaaaggaagttgatttaattaaatttttaacagataaatttggcgaaagtaatgta
aaagtgttataa
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