Corynebacterium flavescens: CFLV_04495
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Entry
CFLV_04495 CDS
T05018
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfc
Corynebacterium flavescens
Pathway
cfc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFLV_04495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfc03400
]
CFLV_04495
Enzymes [BR:
cfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFLV_04495
DNA repair and recombination proteins [BR:
cfc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFLV_04495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
DUF3638
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
APT86516
UniProt:
A0A1L7CKX3
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All DBs
Position
956487..960125
Genome browser
AA seq
1212 aa
AA seq
DB search
MLGGLLKVCATDPKLKGLLAQVGAKNLAITGIDQARSWAIGALAHRTRLLVVTATGREAE
DLTAELRAMVGDKVAFFPAWETLPHERLSPGADIVGKRARVLDHLDELSVVVTAARGFAQ
PILREVEGRAPLKLVEGEEYQFDHVVSELQFRAYKHVDMVAKRGECATRGGIVDIFPTTL
DYPVRVEFWGDEISDIRQFSVADQRTIPEIQVGHVDVYPARELPITQEVAARAAQLAVEF
PGNPALVELLSKVGEYIPSEGMEALLPALSTSEMVTLPEFMPGDTHVLLIAPERIHTRVA
DLESTDSEFLAAGWEAAAMGADGPLATEGLDTSAGSYRSFESLEVTVEKHGMPLWTFSPP
GMLVADESQTLPLEFEAGPAPRGDITAIETMMSELLAHTNAGGRAAFIAPAQGAIKRMVE
RFAEKGIRTKVATPGWEPSAGEVTLYQALSHAGLVFPKVRKLKDAQALPLVVITETDLTG
NRVGDIAGAKRRPAKRRNRVDPLALKQGDYVVHETHGIGRFLKMAERTIQSGDETSRREY
IVLEYAPAKRGQPADQLWVPMDSLDLLSKYSGGESPTLSKMGGSDWKNTKKKARAAVREI
AGELVELYAKRQSAPGHQFAPDTPWQAEMEDNFPYVETEDQMSAIESVKHDMESTVPMDR
VIVGDVGYGKTEVAVRAAFKAVQDGMQVAVLVPTTLLAQQHHETFVERMSGFPIEIRVLS
RFTSPKETKETLKALADGTVDIVIGTHRLLQTGVHWKNLGLVVVDEEQRFGVEHKEHIKA
LKASVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAYEDKQVVAAIRR
ELLRDGQTFFIHNKVADIEKKARELRDLVPEARIVVAHGQMNEELLEQTVQGFWDREYDV
LVCTTIVETGLDIPNANTLIVENAHHMGLSQLHQLRGRVGRSRQRGYAYFLYPKGATLTE
TSYDRLATIAQNNDLGAGMAVAMKDLEMRGAGNVLGAQQSGHIAGVGFDLYVRLVGEAVD
TFKALAKGEIPKATDDGPKEIRIDLPVDAHIPEKYINSERLRLEVYRKLAASKNNQDLRV
AVEEMEDRYGPIPREVTRLLAVARLRHQARRAGVSDITVQGTRIKVHPVVLPDSKQVRLK
RLYPGSTYRPAAQAIQLSFPKAGRNVTSPKLRDVELLQWMSDFLARMFDLDKLDVMGGAA
PQAGAEVVSVSQ
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgctggggggactgctcaaagtctgcgccactgatcccaagctcaaggggctgctcgca
caggtgggcgccaagaacctcgccatcacaggtatcgaccaagcgcggtcgtgggccatc
ggcgcactggctcatcgcactcgcctgctggtggtgacagcaaccgggcgtgaggccgaa
gacctcactgcggaattgcgtgcgatggtgggggacaaggtggccttctttcccgcgtgg
gaaaccctcccgcacgagaggttgagccctggtgcagacatcgtcggcaagcgcgcacgg
gtgctcgaccacctggacgagctctccgttgtggtcaccgccgcccgtggttttgcgcag
ccgattctgcgcgaggtcgaagggcgagcgccactcaagctcgtagagggcgaggaatac
caattcgaccacgtggtatccgagctgcagtttcgtgcctataagcacgtggacatggtg
gccaagcgcggcgaatgcgccacccgtggcggcatcgttgacattttccccaccacgctg
gactacccggttcgcgtggagttttggggcgatgaaatcagtgacatccgtcaattctct
gtcgcggatcagcgcaccatccccgaaatacaggtcgggcatgtagacgtctatccggct
cgcgagcttcccattacccaagaagtagccgcgcgcgcagcccagctggcggtggagttt
cccggaaacccggccttggtcgagcttttaagcaaagtgggggagtacatcccctccgag
ggaatggaggcgctgctgccggccctaagcacctcggagatggtgacgttgcccgagttc
atgccgggggacacccacgtgctgctcatagcgccggagcggatccatacccgggttgcg
gatctggagtcgaccgattccgagttccttgccgccggttgggaggccgcggccatgggc
gcggatggaccgctggctaccgagggcctcgacacgagtgcgggaagctaccgttccttt
gaatcgctagaggtcaccgtggaaaagcacggcatgccgttgtggactttctccccgcca
ggcatgctcgtggccgatgaatcgcagacccttcccctcgaatttgaggcgggcccagcc
ccgcgcggtgacatcacagccatcgagactatgatgtccgagcttttggcacacaccaac
gctggagggagagccgcgtttattgcgcctgcgcaaggcgcaatcaagcgcatggtcgag
cgttttgccgagaaaggcattcgcaccaaggtagccacgccgggctgggagcctagcgcg
ggcgaggtcaccctctaccaggcgttgagccatgccggactcgtattccccaaggtgcgc
aagctcaaggatgcgcaggcgctgccgctggttgtcatcacggagactgatctcaccggc
aaccgcgtcggcgatattgccggggccaagcgtcgtccggccaagcgccgcaaccgcgtt
gacccgctggcgctgaagcagggcgattatgtcgtgcatgagacgcacggtatcggtcgt
tttctcaagatggccgagcgtacgattcagtccggtgatgagacctcgcggcgcgaatac
atcgtcctcgagtacgcgccagccaagcgtgggcagccggcagatcagctgtgggtgccc
atggattccctcgatttgctgagcaagtactcaggcggagagtcgccgactctgtccaag
atgggcggctcggattggaagaataccaagaagaaagcacgcgccgctgtgcgagaaatc
gccggcgaactcgtggagctctacgccaagcggcagtccgcgcccgggcatcaattcgcc
ccggacacgccctggcaggcggagatggaggataacttcccctacgtcgagaccgaagac
cagatgtctgccattgagtcggtcaagcacgatatggaatccacggtgcccatggaccgc
gtcattgtgggcgacgtcggttatggcaagaccgaggtagccgtgcgcgcggcattcaag
gcggtgcaggatgggatgcaggtcgcggttctcgtgcccacgactctgcttgcccagcag
caccatgagacttttgtcgagcgcatgtccggattccccatcgaaatcagggtgctctcg
cgctttacctcgcccaaagaaacgaaggaaacgctcaaggctctcgcggatggcaccgtt
gacatcgttattggtacccaccggctgctccagactggcgtgcactggaagaacctgggg
ctcgtcgtcgtcgacgaggagcagcgctttggcgtggagcacaaggaacacatcaaggcc
ttgaaggcctccgtcgatgtcttgaccatgtccgccactccgatcccgcgcaccctggag
atgtctatggccgggatccgtgagatgtcgaccattcttaccccgccggaggataggcac
cccgtgttgacctacgtcggtgcctatgaggacaagcaggttgtcgccgccattcgccgc
gagctgttgcgtgatggacagaccttcttcatccacaacaaggtggctgacattgagaag
aaggcgcgcgagctgcgtgacttggttcccgaggcccgcatcgtggtcgctcatgggcag
atgaacgaggaattgctcgagcaaacagtgcaggggttctgggaccgggagtatgacgtg
ctggtgtgtaccaccatcgtggagacgggcctggatattcccaatgccaacacactcatc
gtggaaaatgcccaccacatggggctcagccagctccaccagctacgcgggcgcgtcggg
cgatcccggcagcgcggttatgcctacttcctttatccgaagggtgccacgctgacggag
acttcctatgaccgcctagcaaccattgcccagaacaacgatctcggtgccggtatggcc
gtggccatgaaagacctggagatgcgtggtgccggaaacgtgcttggcgcgcagcaatcc
gggcatatcgccggcgtcggattcgacctttatgtccgtttggtcggagaggcggtagat
accttcaaagcgctcgcgaagggggagatccccaaggccacggatgatgggccgaaggag
attcgcatcgatcttccggttgatgcgcatatcccggagaagtacatcaactctgagcgc
ctgcgcctagaggtctaccgcaagctcgccgcctccaagaacaatcaggatctgcgcgtg
gctgtggaggaaatggaggaccgctacggtcccatcccgcgggaagtcacgcgcctgctc
gctgtagcacggctccgccatcaggcgcgccgggccggggtttcggacattactgtgcag
ggcactcgcatcaaggtgcatccggtagtcttgcctgattccaagcaggttcgcctcaaa
cgcctttacccgggatcgacgtatcgtcccgcggcgcaggcaatccagctttccttcccc
aaggccggtcgaaacgtcaccagccccaagctgcgggatgttgagcttctgcagtggatg
agtgatttcttggcgagaatgtttgatctagacaagctcgacgtcatgggaggagccgca
ccgcaggcaggggcggaggtagtctccgtcagccaataa
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