Corynebacterium flavescens: CFLV_04980
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Entry
CFLV_04980 CDS
T05018
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfc
Corynebacterium flavescens
Pathway
cfc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFLV_04980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfc03019
]
CFLV_04980
03009 Ribosome biogenesis [BR:
cfc03009
]
CFLV_04980
Enzymes [BR:
cfc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFLV_04980
Messenger RNA biogenesis [BR:
cfc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFLV_04980
Ribosome biogenesis [BR:
cfc03009
]
Prokaryotic type
rRNA helicases
CFLV_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
adh_short
UvrA_inter
PIN_9
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APT86596
UniProt:
A0A1L7CL48
LinkDB
All DBs
Position
1059289..1061235
Genome browser
AA seq
648 aa
AA seq
DB search
MSITDNATGGTKEPEEFTKSESQEISQGDIDNTGAANTSEDAGAEDTSANDNSQGFANLG
LPDDVQQAVAKVGYTQPSPIQEQTIPILMEGRDVVGLAQTGTGKTAAFALPVLSQIDVKA
RHPQALVLAPTRELALQVADSFQTFADHLGRIEVLPIYGGQAYGIQLSGLRRGAQVIVGT
PGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILEDTPEGKQVALFSATMPN
GIRRLSKRYLNDPAEITVKSERRTNDNIKQRYLLTPHRQKMDAFTRILEVIDYDAIIVFC
RTKHETEEVADQLKERGYNAAAINGDIAQQQRERTVDQLKDGRLDILVATDVAARGLDVD
RITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNARLEEME
LPTVDAVNDKRKERFAQAITDNLETKQSELFRGLVRKYSETNNVAMDDIAAALAVQLQGG
TEFLLKDQPAFKKDRRDRDRFSRDDRGDRGDRGHRGGFRDRDRGDRGPRRPDGDFETYRL
DVGKRQNVRPGAIVGAIANEGGLSSKDFGRITIAVGHTLVDLPKGMDPQVLDRLKDTRIS
GQLINIQKDSGRPPHRGGGDRDRGDRGGRGGYRGNRDRDRGGRGGWRD
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcacgaaagagccggaagaatttactaagtcg
gaatctcaggaaatctcgcaaggtgatattgacaacaccggggctgcgaatacttctgag
gacgccggcgctgaagatacttcagccaatgacaactcccaggggtttgcaaacctcggc
ctgcctgatgatgtgcagcaagccgttgcgaaggttgggtacacccagccgtcccctatc
caggaacaaaccatcccgatcttgatggaaggccgcgacgtcgtcggccttgcccagacc
ggtaccggcaagaccgcagctttcgcgctgcccgtcttgtcgcagattgacgtcaaggcc
cgccacccgcaggccctcgtccttgcccccacccgtgagcttgcactgcaggttgcggat
tctttccagactttcgccgatcacctaggtcgcattgaggtgctgcctatctacggtggt
caggcttatggcattcagctctccggcctgcgccgaggagcacaggtcatcgtgggtact
cccggccgtgtcatcgaccacctagagaagggctcactggatatttcccagctgcgcttc
ctcgtgctcgatgaggctgatgagatgctcaacatgggcttccaggaggatgtcgagcgc
atcttggaggacaccccggagggcaagcaggttgctttgttctcggcgaccatgcccaat
ggcatccgccgcctgtccaagcgctacctcaacgacccagccgagatcacggtcaagtcc
gagcgtcgcaccaacgacaacatcaagcagcgctacctgctgaccccgcaccgtcagaag
atggacgcgttcacgcgcatcctcgaggtcattgactacgacgccatcatcgtgttctgc
cgtaccaagcatgagaccgaagaggtagcggatcagctcaaggagcgcggatacaatgct
gctgccatcaacggcgacatcgcccagcagcagcgtgagcgcaccgttgatcagctcaag
gatggtcgcctcgacatcctcgtggctactgacgttgccgcgcgtggcctcgacgttgac
cgcatcacgcacgtggtcaacttcgatatccccaacgacaccgagtcctacgtgcaccgc
attggccgtactggccgcgcgggtcgtaccggtgaggcgatcttgttcgtcactccgcgc
gagcgtcggatgctgcgttccatcgagcgcgtcaccaatgcacgcttggaagagatggaa
ctgcctaccgttgatgccgtcaacgacaagcgcaaagagcgtttcgcgcaggccatcacg
gataatctcgagaccaagcaaagcgaattgttccgcggcctagtgcgcaagtactccgag
accaacaacgttgcgatggatgacatcgctgccgcattggccgtacagctgcagggcgga
actgagttcctgctcaaggatcagcctgccttcaagaaggatcgccgtgaccgcgaccgc
ttcagccgcgacgaccgtggagaccgcggcgaccgcggacatcgcggaggattccgtgac
cgtgatcgcggagaccgtggcccccgtcgcccggatggagatttcgagacctaccgtctc
gacgtcggcaagcgtcagaacgtgcgcccaggcgccatcgtcggtgccattgccaacgag
ggtggcctgtcctccaaggactttggccgtattaccatcgccgtggggcataccctcgtc
gatctgcccaagggcatggacccgcaggtgctcgatcgtctcaaggacacccgcatctct
ggccagctgatcaacatccagaaggactctggccgtccgcctcatcgtggcggcggagac
cgtgatcgcggagatcgtggtggacgcggtggttaccgcggaaatcgcgaccgtgaccgt
ggtggtcgcggcggctggcgcgactaa
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