Citrobacter freundii CFNIH1: CFNIH1_03470
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Entry
CFNIH1_03470 CDS
T03077
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
cfd
Citrobacter freundii CFNIH1
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfd03019
]
CFNIH1_03470
Messenger RNA biogenesis [BR:
cfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFNIH1_03470
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
AHY10614
LinkDB
All DBs
Position
complement(716917..718857)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKFTTRVQAVATAIDTHLVSHDFVS
LTPQIDELMVSVDIVRIELLQGEHIVYDHSRTSSYRPAGTNNLYRDITVPLIKHPGMSVR
LVYQDPMGNYFHSLLTTAPLTLAIAFIILMLFLSVRWLQRQLSGQELLEIRSTRILNGER
GSNVRGTVYEWPARTSSALDMLLTEIQNAREQRSRLDTLIRSYVAQDTKTGLSNRLFFDN
QLATLLEDQEKVGAHGVVMMVRLPDFTLLRDSWGITLAEEQISTLINLLSTFMTRYPGAL
LARYHRSDFAILLPHRTLKEAESIAGQLLKAVDALPTNKMIDRADMVHIGICVCRSGQST
EQVMDHAEAATRNSVLQGGNSWSVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
TREGRVHHRELMCRIFDGSEEVISAEYMPMVLQFGLAEEYDRLQLSRLILLLGYWPQESL
AMQITVESLIRPRFQRWLRDTLMQCEKSLRKRIIIELAEADVCQHISRLQPVIRLMDALG
VRIAVTQAGLTLVSTSWIKELNVELLKLHPSLVRNIDKRTENQLLVQSLAEACSGTPTQV
YATGVRSRSEWHTLTERGVAGGQGDFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctcagcttttgtcacgctgcttactgggttaacgatcttt
gtgactctgattggctgctcgctgagtttctacaacgctattcaatataagttcactacg
cgagtgcaggcggtggcgacggcgattgatacacatcttgtctcccacgatttcgtttcg
ctgacgccgcaaatcgatgaactgatggtttctgttgatatcgtgcgtatcgagttgctg
caaggggagcatatagtgtatgaccactcccgaaccagcagctaccgcccggcaggaacg
aacaacctctaccgcgacatcaccgtaccgttgatcaagcatccgggcatgtcagttcgc
ctggtttatcaggatccgatgggcaattatttccattcgctactgactaccgcgccgctc
acgctggccattgcgtttattattctgatgctctttttgtcggtacgctggcttcagcgt
cagctttcaggccaggagttactggagattcgttccacgcgtattctgaacggtgaacgc
gggtcgaatgtacgaggaacggtctatgaatggccagcgcgcaccagcagtgcgctcgat
atgttgctgactgaaattcaaaatgcccgcgagcaacgcagccgactggacaccctgatt
cgttcctatgttgcgcaggatacaaaaactgggctgagtaaccgtctgttttttgataac
cagttggccacgctgctggaagatcaagaaaaggtgggagcgcatggcgtcgtgatgatg
gtgcgtctgccggactttactctgctgcgagatagctggggaatcaccctggcggaagaa
caaatttcaacgctaatcaatttgttgtcgacgtttatgacgcgttatccgggggcattg
ctggcgcgctaccaccgtagcgattttgccatcctgttgccacatcgcacgctgaaagaa
gccgaaagcatcgccgggcaattattaaaagcggtcgatgcgcttccgactaataaaatg
atcgatcgtgccgatatggttcatattggcatttgcgtttgccgcagtggtcagtcgacg
gaacaggtgatggatcatgctgaggccgccacccggaattcggtcctgcagggtgggaac
agctggtcggtctatgatgactccctgccggaaaaaggccggggcaacgtgcgctggcgg
acgctgattgaacagatgctcagccggggcgggccgagaatatatcaaaaacctgcggta
acgcgtgaaggacgggtacaccaccgggaactgatgtgccgtatttttgatggcagcgaa
gaagttatttcggcggaatatatgccgatggtgctgcaatttggcctggctgaagagtat
gaccgtttacagttaagtcgtctgatcctgcttttgggctactggccgcaggaaagcctg
gcgatgcagataacggttgaatcgctaattcgcccacgttttcagcgctggctgcgtgat
acgttgatgcagtgcgaaaaatcactacgcaaacgcataattattgaacttgctgaggca
gatgtttgtcaacatatcagccgattacagcccgtcatccgattgatggatgcgctaggg
gtacggatcgccgttacgcaggccggtttaacgctggtgagcaccagttggattaaagag
cttaacgttgagttattgaagctgcatccaagcctggtgaggaatattgataagcgaacc
gaaaaccaactgttggttcaaagcctggcggaggcctgttcaggcacgccaacgcaggtt
tatgccacgggagttcgttcgcgtagcgagtggcatacgctgacggaacgcggagttgct
ggtgggcaaggggatttttttgccgcatcacagccacttgacactaacgtgaaaaaatat
tcgcaaagatattcggtttaa
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