Citrobacter freundii CFNIH1: CFNIH1_03780
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Entry
CFNIH1_03780 CDS
T03077
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cfd
Citrobacter freundii CFNIH1
Pathway
cfd03420
Nucleotide excision repair
cfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFNIH1_03780 (uvrD)
03430 Mismatch repair
CFNIH1_03780 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfd03400
]
CFNIH1_03780 (uvrD)
Enzymes [BR:
cfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFNIH1_03780 (uvrD)
DNA repair and recombination proteins [BR:
cfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFNIH1_03780 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CFNIH1_03780 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHY10668
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All DBs
Position
complement(782120..784282)
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AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIAWLLTVENNSPYSIMAV
TFTNKAAAEMRHRIGQIMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWFINSQKDEGLRPHHLQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTNNILSAANALIENN
NGRLGKKLWTDGVDGEPISLYCAFNELDEARFVVNRIKTWQDNGGALEQCAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRMMYEQEKGEKGQTRIENLDELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEACVEEVRLRATVSRPVSHQRMG
TPMAENDTGYKLGQRVRHAKFGEGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaatgataaacagcgtgaagcggtggctgcg
ccacgcagcaacatgctggttctggcaggcgcggggagtggtaaaactcgcgtactggtg
catcgtatcgcctggttactgacggtagagaacaactcgccgtactccattatggcggtg
acctttaccaacaaagcggcggcggaaatgcgccaccgtattggtcagatcatgggaacc
agccaaggcggaatgtgggtggggacctttcacggcctggcgcaccgtctgttgcgcgcg
caccatatggatgccaacctgccgcaggatttccagatcctcgacagcgaggaccaactg
cgtctgctcaagcgcctgatcaaagcgatgaaccttgacgaaaagcagtggccgccgcgt
caggcaatgtggtttatcaacagccagaaagatgaagggctgcgcccgcaccatctgcaa
agctacggcaacccggtcgaacagacctggcagaaggtctatcaggcttatcaggaagcc
tgcgatcgcgcggggctggtggatttcgccgaactgctgctgcgcgcccatgaactgtgg
ctcaacaagccgcacattctgcagcactaccgcgaacgctttaccaatatcctggtggac
gaattccaggataccaacaacattcagtacgcctggatccgtctgctggcgggcgacacc
ggcaaggtgatgatcgtgggcgatgatgaccagtcgatctacggctggcgcggcgcgcag
gtggagaacattcagcgcttcctcaacgatttcccgggcgcagaaaccattcgtctggag
cagaactaccgttcgaccaacaatattcttagcgcagctaacgccctgattgaaaataac
aacggacgcctgggtaaaaaactgtggaccgacggcgtcgacggcgagccgatctcgctg
tactgcgcgttcaacgaacttgatgaagcgcgcttcgtggtcaatcgcattaaaacctgg
caggacaacggcggcgcgctggaacagtgcgcgattctgtatcgtagcaacgcccagtca
cgcgtgttggaagaagccttactacaggccagcatgccgtatcgtatctatggcggtatg
cgcttctttgaacgtcaggaaattaaagacgcgctctcctacctgcgcctgatcgctaac
cgcaatgacgatgccgcgtttgagcgtgtggtgaatacgccaacgcgcgggattggcgat
cgtactttagatgtcgtgcgccagacttcccgtgaccgccagctaacgttgtggcaggcc
tgtcgtgaactgctgcaggaaaaagccctggccggtcgagccgccagcgccttacagcgc
tttatggaactgattgacgcgctggcgcaagagaccgccgatatgccgctgcacgtgcag
actgaccgggtgattaaagattccggcctgcgcatgatgtacgagcaggaaaaaggcgag
aaaggtcagacgcgtatcgaaaacttagacgaactggtgacggcaacgcgccagttcagc
tacaacgaagaagacgaagacttaatgccgctgcaggcgttcctctcccacgccgcgctg
gaagcaggcgaagggcaagcggatacctggcaggacgcggtacagctgatgaccctgcac
tcggcgaaagggctggagttcccacaggtatttatcgtgggtatggaagaaggcatgttc
ccgagccagatgtcgctggatgaaggcggccgtctcgaagaagaacgtcgcctggcctat
gttggcgtcacccgcgcgatgcagaaactgacgctcacctacgccgaaacgcgtcgtttg
tacggtaaagaggtttaccatcgtccgtcgcgctttatcggcgaactgccggaagcgtgc
gttgaagaggtgcgtctgcgcgccacggttagccgtccggtgagccatcagcggatgggc
acgccaatggcggaaaacgataccggctacaaacttggccagcgggtacgccacgcgaag
ttcggcgagggcaccatcgtcaacctcgaaggtagcggtgagcacagtcgtttgcaggtc
gcgttccaggggcagggcattaaatggctggtggcggcttacgccagactggaaacggtg
taa
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