Citrobacter freundii: CFNIH1_03940
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Entry
CFNIH1_03940 CDS
T03077
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cfd
Citrobacter freundii
Pathway
cfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFNIH1_03940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfd03019
]
CFNIH1_03940
Enzymes [BR:
cfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFNIH1_03940
Messenger RNA biogenesis [BR:
cfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFNIH1_03940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHY10695
LinkDB
All DBs
Position
813139..814407
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AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPTTQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIVFANTKHRCEDIWGSLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaggtg
atagaagcccttgaaaataaagggtttcataactgcacgcccattcaggccctcgcgctg
ccgctaacgctggcaggtcgtgatgttgcagggcaggcgcaaaccggtaccggaaaaacg
atggcgttcctgacgtcaacgtttcattatcttctctctcatcccgcgattgccgatcgc
aaggtgaaccaaccgcgtgcgttaattatggcgccaacgcgtgagttagccgtgcaaatc
cacgccgatgccgagccgctggcacagaccaccggtctgaaattaggcctggcttatggc
ggcgacggttacgacaaacagctaaaagtgctggaaagcggcgtcgatattcttatcggc
accaccggtcgtctcattgactatgcaaagcagaaccacattaacctgggcgcgattcag
gtcgtggtgctggatgaagccgatcgtatgtacgatctgggctttattaaagatatccgt
tggctgttccgtcgtatgccgccaaccacccaacgtctgaacatgctgttttctgcaacc
ctttcttatcgcgtccgcgaactggcgttcgaacaaatgaataacgctgagtatgtggaa
gtcgaaccggagcagaagacaggtcaccgcatcaaagaagaactcttctatccttccaac
gaagaaaaaatgcgtttattgcaaacgctgattgaagaagagtggccagatcgcgccatc
gtctttgctaacaccaagcatcgttgtgaagatatctggggcagcctcgctgcggatggt
catcgcgtcggcctgctgaccggtgacgtggcgcagaaaaaacgcctgcgtatcctggat
gagttcacccgtggcgatctcgacattctcgttgcgactgacgtggccgcgcgtggcctg
catatcccagccgtaacgcacgtctttaactatgacctgccggatgactgtgaagattac
gttcaccgtatcggtcgtacgggtcgtgctggcgcaagcggtcactctatcagcctggcc
tgcgaagaatacgcgctgaatttacctgcaatcgagacctatatcggccactcgattccg
gtcagcaagtacaacccggatgcgctaatgaccgatctgccgaagccgctgcgcctgaca
cgcccgcgtacaggtaatggcccacgtcgtaccggtggcgctccgcgtaatcgtcgtcgt
tcaggttaa
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