Citrobacter freundii CFNIH1: CFNIH1_08555
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Entry
CFNIH1_08555 CDS
T03077
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cfd
Citrobacter freundii CFNIH1
Pathway
cfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFNIH1_08555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfd03019
]
CFNIH1_08555
03016 Transfer RNA biogenesis [BR:
cfd03016
]
CFNIH1_08555
Enzymes [BR:
cfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFNIH1_08555
Messenger RNA biogenesis [BR:
cfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFNIH1_08555
Transfer RNA biogenesis [BR:
cfd03016
]
Prokaryotic type
tRNA degradation factors
CFNIH1_08555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AHY11552
LinkDB
All DBs
Position
1766473..1768935
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AA seq
820 aa
AA seq
DB search
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPANRDELAAELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EEVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTSMAVDMALRTHEIPYIWPQA
VEKQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDQEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
SKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP
ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAQEQGHKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLTGESSGQMYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNEGKTAREKAKKGDAGKTTGKRRQMGKKVNFEPDSAFRGEKKGRAKPQ
ADKKTAEKKGDKKAKKPSAKTRKIAAATKAKRAAKKNVAQ
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaaccctatcccgagc
cgggaatttatcctcgaacatttaactaaacgtgaaaaaccggccaaccgcgatgagttg
gccgctgaactcaacattgaaggtgaagaacagcaagaagcgctgcgtcgtcgcctgcgc
gcgatggagcgtgacgggcaactggtcttcactcgtcgtcagtgctacgcgctgccggaa
cgtcttgacctgctgaaaggtaccgttattggccaccgtgatggctacggctttctgcgc
gtcgaaggccgcaaagatgatctgtacctgtccagcgagcagatgaaaacctgcattcat
ggcgatcaggtgctggcgcagccgctgggcgcggaccgtaaaggtcgtcgcgaagcgcgt
attgtgcgtgtactggtgccgaaaaccagccagattgtcggccgctactttaccgatgct
ggggttgggtttgtcgtcccggacgatagccgcctgagtttcgatatccttattccgccg
gaagaggttatgggggcgcgtatgggctttgtggtcgtggttgagctgacccagcgtcca
acccgtcgcaccaaagctgtgggtaaaatcgttgaagttttgggcgacaacatgggcacc
agcatggctgttgatatggccctgcgtacccatgaaatcccgtatatctggccgcaggca
gtcgaaaaacaggttgccgggctgaaagaagaagtgccggaagaggcgaaagttggacgt
gttgatctacgcgatctcccgctggtcactattgatggcgaagatgcgcgtgacttcgat
gatgcggtttactgcgagaagaaacgcggcggcggctggcgtttatgggtggcgattgct
gacgtaagctattacgtccgcccgccgactccgttggatcaggaagcgcgcagccgtggc
acgtctgtctacttcccgtcgcaggttgtcccgatgctgccggaagtgctgtctaacgga
ttgtgttcgctgaacccgcaggtagaccgtctgtgtatggtgtgcgaaatgaccatttcg
tcgaaaggtcggttaaccggctttaaattctacgaagcggtaatgagttcccatgcgcgt
ctgacctacaccaaagtctggcacatgctgcagggcgatcaggaactgcgcgagcagtat
gcgccgttagtgaaacatattgaagagctgcataatctctacaaagtgctggataaagcc
cgggaagaacgcggcggtatctcgtttgaaagtgaagaagcgaagtttattttcaacgct
gaacgtcgtattgaacgtatcgaacagacgcaacgtaacgacgcgcacaagctgattgaa
gagtgcatgatcatggcaaacatctcagcggcgcgattcgttgagaaagccaaagagcca
gcattgttccgtattcacgataagccgacgaccgaagcgattacctccttccgttccgta
ctggccgaactgggcctggaactgcctggcggcaataaacccgagccgcgcgattacgct
gaattgctggagtcgattgccgaccgtcctgacgcggaaatgctgcaaactatgctgctg
cgctcgatgaagcaggcgatttacgatccagaaaaccggggtcactttggtctggcgctg
caatcttatgcgcactttacctcgccgattcgtcgttacccggatctctctttgcaccgt
gcaattaaatatttgctggcgcaggagcagggccataaaggcaacaccacggaaaccggt
ggctatcattattcaatggaagagatgctgcaacttggccagcactgttcgatggccgaa
cgccgtgctgacgaagctacgcgcgacgtctctgactggctgaagtgtgacttcatgctg
gatcaggtgggtaacgtctttaaaggcgtaattgccagcgtgaccgggtttggcttcttt
gtccgtcttgacgaactgtttatcgacggtttggtgcatgtctcctccctggataacgac
tactatcgctttgaccaggttgggcagcgtctgacgggtgagtcaagcggtcagatgtat
cgcctgggcgatcgtgtggaagttcgcgtggaagcggtcaacatggacgagcgtaaaatc
gatttcagtttgatctccagcgaacgtgcgccgcgcaatgagggcaaaaccgcacgcgaa
aaagctaaaaaaggcgatgcaggtaaaactaccggtaaacgtcgtcaaatgggcaaaaag
gtgaatttcgagccggacagcgcattccgcggcgagaagaaaggcagagccaaacctcag
gcggataaaaaaacggctgagaagaaaggcgataaaaaagcgaaaaagccatcggcaaaa
acgcgtaaaatcgctgccgccaccaaagctaaacgtgcggcgaaaaagaacgtcgcacaa
taa
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