Citrobacter freundii CFNIH1: CFNIH1_14105
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Entry
CFNIH1_14105 CDS
T03077
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cfd
Citrobacter freundii CFNIH1
Pathway
cfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFNIH1_14105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfd03019
]
CFNIH1_14105
Enzymes [BR:
cfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFNIH1_14105
Messenger RNA biogenesis [BR:
cfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFNIH1_14105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHY12605
LinkDB
All DBs
Position
2938324..2939664
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AA seq
446 aa
AA seq
DB search
MSFDSLGLNPEILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLVTHQPHGKSRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDDIKSLAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRIATPGYEPDPSIKAEPIQNGRQQRGGGRGQGGAGRGQQPRRQDGGAPKGK
PRSGEGKPAGDKPRPPRRPRRPSSAQ
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggtttgaaccctgagattttacgtgccgttgccgagcagggt
taccgtgaacctacccctattcagcagcaggcgatccccgccgtgctggaaggccgcgat
ctgatggccagcgcccagaccggtacggggaaaacagcaggctttaccctgccgttgttg
cagcatcttgtgactcatcagccgcatggtaaaagccgtcgtccggttcgtgcgctgatc
ctcacgccgactcgcgagctggcggcccagattggcgaaaacgtacgtgattacagtaag
tatctcaatattcgctcgctggtggttttcggcggtgtcagcattaacccacagatgatg
aagctgcgtggcggcgtagatgtgctgattgccaccccgggtcgtttgctcgatctggaa
caccagaatgcggtgaaactggatcaggtagagatcctggtgctggatgaagctgaccgc
atgctggatatgggctttattcatgacattcgtcgcgttctggcgaaactgccggcaaaa
cgccagaacctgctgttctcggcaacgttctctgacgatattaaatcgctggccgaaaag
ctgctgcataacccgctggaaatcgaagtggcgcgtcgtaataccgcgtctgagcaggtg
actcagcatgtgcatttcgtggataaaaaacgcaaacgtgaactgttgtcgcagatgatt
ggtcagggcaactggcagcaggtgctggtgtttacccgtaccaaacacggtgcaaaccat
ctggcggaacaactgaataaagacggcattcgcagcgcggcgatccacggtaacaaatct
cagggggcgcgtacgcgtgcgctggccgattttaaatccggtgatattcgcgtgctggtg
gcgaccgatattgccgcgcgcgggctggatattgaagagctgccgcacgtggtgaactac
gagttgccaaacgtcccggaagattacgtgcaccgtattggtcgtaccggccgcgcggcc
gccaccggcgaagcgttgtctctggtgtgcgtcgatgaacacaaactgttgcgtgatatc
gagaagctgctgaaaaaagagatcccacgtattgcaacgccaggctacgagccagacccg
tctatcaaagctgagccgattcagaacggtcgccagcagcgtggcggcggtcgcggccag
ggcggagcaggacgtggccagcagccgcgtcgtcaggatggcggcgcgccgaaagggaaa
ccgcgtagcggcgaaggcaaaccggcaggcgataagcctcgtccaccgcgccgtccgcgc
agaccgtcttcagcgcagtaa
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