Citrobacter freundii CFNIH1: CFNIH1_15430
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Entry
CFNIH1_15430 CDS
T03077
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cfd
Citrobacter freundii CFNIH1
Pathway
cfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFNIH1_15430 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfd03019
]
CFNIH1_15430 (rne)
03009 Ribosome biogenesis [BR:
cfd03009
]
CFNIH1_15430 (rne)
Enzymes [BR:
cfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CFNIH1_15430 (rne)
Messenger RNA biogenesis [BR:
cfd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFNIH1_15430 (rne)
Ribosome biogenesis [BR:
cfd03009
]
Prokaryotic type
rRNA processing factors
CFNIH1_15430 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AHY12860
LinkDB
All DBs
Position
complement(3215186..3218422)
Genome browser
AA seq
1078 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQNGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYLLPKLHEEAMELPSEQEYVERKQPEQPALATFAMPDVPPA
PTVQEPAVKAVAPKAAAATAATASQPGLISRFFSALKSIFGGNEEAKPVEQPVPKAEEKT
ERQQDRRKPRQNNRRDRNDRRDNRDNRGDRDNRNERAENGENRDDNRRNRRQAQQQNAEA
RDNRQQSSDVADKAKSGDEQQTPRRERNRRRNDDKRQAQQEVKELNLAEQQAQDTEQEER
VRQPQTRRKQRQLNQKVRYTDSTAVEAEVATTAAAAEVVVAQPVEQSVPTPRTELAKVDL
PAVVAPEQEDNSEARDSNGMPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLTVACAS
PELASGKVWISYPVVRPQDQQVAEQREQEIHQEQTASVAVEPQVAAAAVEHIADTPAPVE
AVQPEDVVAEPQIAIVETTHPEVIATPVEEQPQIIAESDAPVAEEIAAEAQPVAETPAEE
PAEIVVSRPEVVEEVAQVAQAAPVVEEVAAPQEVVAAPVVEAEVVKSDVVATSVDAEHLH
SHATAPMTRAPAPDYVPEAPRHSDWQRPPFTFEGKGAAGGHSATHQATAPATRPQPVE
NT seq
3237 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcgactcagcaggaagagttgcgtgtcgcccttgtagat
gggcaacgtctgtacgatctggatatcgaaagtcccggacacgaacagaaaaaagccaac
atctataaaggtaaaattacccgtattgaaccgagtctggaagctgcttttgttgattac
ggcgctgaacgtcacggtttccttccgttaaaagaaattgcccgcgaatacttccccgct
aactacaactcccatggtcgtcccaacattaaagatgtgttgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagaacgcggcaataaaggcgctgcgctgaccacctttatc
agcctggcgggtagttatctggttctgatgccgaacaacccgcgcgcgggcggcatctcc
cgtcgtattgaaggcgacgaccgcaccgaattaaaagaagcgctggcaagcctggaactg
cctgatggtatggggcttattgtgcgtaccgcaggtgtcggcaaatccgccgaagcgctg
caatgggacctgagcttccgcctgaaacactgggaagccattcaaaaagccgccgacagc
cgccctgctccgttcctgattcaccaggaaagcaacgtcatcgtccgcgcattccgtgac
tatttacgtcaggatattggcgaaatcctcattgataacccgaaagtcatggagatggcg
cgtcagcacatcgccgcgctgggtcgtccggatttcagcagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactatcaaattgaatctcagattgagtccgcgttccag
cgcgaagtgcgtctgccgtccggcggctccatcgtcatcgacagcactgaagcccttacc
gctatcgatatcaactccgcccgcgcgacccgcggcggcgacatcgaagaaaccgcattc
aacaccaacctggaagcagccgatgaaattgcacgtcagctgcgtctgcgcgacctcggc
ggcctgattgtcatcgactttatcgatatgacgccggttcgccaccagcgtgcggttgaa
aaccgcctgcgtgaagccgtgcgtcaggaccgagcgcgtattcagatcagccatatttct
cgcttcggcctgctggagatgtcccgccagcgtctgagcccgtcgctgggtgagtccagc
catcacgtctgcccgcgctgctccggcaccggtaccgtgcgtgataacgaatctctgtcg
ctgtctattctgcgtctgattgaagaagaagcgctgaaagagaatacccaggaagttcac
gctatcgttcctgtgccaattgcctcttatctgctcaacgaaaagcgtactgcggtcaac
gctattgagacgcgtcagaatggcgtgcgctgtgtaatcgtgccaaacgatcagatggaa
accccgcactattccgtgctgcgcgtccgcaaaggcgaagaaacgccaaccctgagctac
ttgctgccgaagctgcacgaagaagcaatggaactgccgtcagaacaagagtatgtcgag
cgtaaacagccagagcaaccggcactcgcgacctttgctatgccagacgtgccgccagca
ccaaccgtgcaagaacccgctgttaaagccgttgcgcctaaagctgctgccgccaccgca
gcaacagcctctcagcctggtttgattagccgtttcttcagcgcactgaagtctatcttc
ggcggtaacgaagaagcgaagccggttgaacaacctgtaccgaaagctgaagagaagacg
gaacgtcagcaggaccgccgtaaaccacgtcaaaataatcgtcgcgatcgtaacgatcgt
cgtgataaccgcgataaccgtggcgatcgtgacaaccgtaacgaacgtgcggaaaacggc
gaaaaccgcgatgacaatcgtcgtaaccgtcgtcaggcccagcagcaaaatgcggaagcg
cgcgataatcgccagcaatccagtgatgtcgctgacaaagcgaaatcaggtgatgagcag
cagaccccgcgtcgtgagcgcaaccgtcgccgcaacgatgacaagcgtcaggcgcagcag
gaagttaaagagctgaacctggctgaacagcaagcgcaggataccgagcaggaagagcgc
gtacgtcagcctcagacccgtcgtaaacagcgtcagttgaaccagaaagtgcgttataca
gacagcacggcggttgaagccgaagtggcaactaccgctgcggcagctgaggtcgttgtc
gctcaacccgttgagcagtccgtaccgactccgcgtaccgaactggcgaaagttgatctg
ccagccgttgtcgcacctgagcaggaagacaacagcgaagcgcgtgactccaacggtatg
ccacgtcgttcccgccgttcccctcgccatctgcgcgtaagtggacagcgtcgtcgtcgt
tatcgtgacgagcgttatccggctcagtcgccaatgccgctgaccgtcgcctgtgcttct
cctgaattggcgtccggtaaagtatggatcagctaccctgtcgttcgtccgcaggatcag
caggttgcagaacaacgcgagcaggaaattcaccaggagcaaactgcctctgtcgcagta
gagcctcaggttgctgcggctgccgttgagcacattgcggacactcctgcgccggttgaa
gccgtgcagccagaggacgttgtagcggaacctcagattgccattgttgaaaccacgcat
ccggaagtcattgcgaccccggttgaagaacaaccgcaaattatcgctgaatctgacgca
cctgtagctgaagagatcgccgctgaagctcaaccggtcgctgaaaccccggctgaagag
cctgcggaaatcgttgtctcccggccggaggtggttgaagaagtcgcacaagtcgcgcaa
gcagcacctgttgtggaagaagtcgctgcgccgcaggaagttgttgctgcgccggttgta
gaagctgaagtcgttaagtctgacgttgtcgcaacaagcgttgacgccgagcaccttcac
agccatgcgactgcgccgatgacccgcgctcccgcgccggattatgtgccagaagcgccg
cgtcatagcgactggcagcgcccgccattcacctttgaaggcaaaggcgccgccggtgga
cacagcgccacgcatcaggccactgcgccggcaacacgcccgcagccggttgaataa
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