Citrobacter freundii CFNIH1: CFNIH1_18795
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Entry
CFNIH1_18795 CDS
T03077
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cfd
Citrobacter freundii CFNIH1
Brite
KEGG Orthology (KO) [BR:
cfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfd03016
]
CFNIH1_18795
Enzymes [BR:
cfd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFNIH1_18795
Transfer RNA biogenesis [BR:
cfd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CFNIH1_18795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
OSR1_C
ODP
Motif
Other DBs
NCBI-ProteinID:
AHY13501
LinkDB
All DBs
Position
3895869..3897803
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
VAVIHTEKDRESAEPEELIEPFLTRFVGKVQGKNDRLSIVPDHPLLKEAIPCRAARGVEH
EFKEGDWAVAEMRRHPLKGDRTFYAELTQFITFADDHFVPWWVTLARHNLEKEAPDGVAT
EMLDEGLVRQDLTALNFVTIDSASTEDMDDALYAEELADGKLQLTVAIADPTAWIAEGSK
LDKTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMIITTDGTIEDNITF
FAATIESKAKLAYDNVSDWLEGTGDWQPENDAIAEQIRLLHRICLSRGEWRHNHALVFKD
RPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANICAARVLRDTLGFGIYNVHMGFD
PANADALAALLKTHGMHVDAEEVLTLEGFCKLRRELDAQPSGFLDSRIRRFQSYAEISTE
PGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGETIARPQDDTTLQMAERRRLNRM
AERDVGDWLYARFLSDKAGTDVRFAAEIIDVSRGGMRVRLVDNGAVAFIPAPFLHAVRDE
LVCSQESGTVQIKGEVVYKVTDVIDVTIAEVRMETRSVIARPAV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggacaacccgctgctagcgcagcttaaacagcaactacattcccagacgccg
cgtgctgaaggggtggtaaaagccacggaaaaaggctttggcttcctggaagtcgatgca
caaaaaagctatttcattccaccgccgcagatgaaaaaagtgatgcatggcgaccgtatt
gttgcggtgatccatacggaaaaagatcgtgagtctgctgaaccggaagagctaatcgaa
cccttcctgacgcgcttcgtgggtaaagttcagggcaaaaatgaccgtctgtctattgtg
ccggatcatccgttactgaaagaggcgatcccttgtcgcgccgcccgtggcgttgagcat
gaatttaaagaaggtgactgggccgtggcagaaatgcgccgccatccgctgaaaggcgat
cgcaccttctacgctgaactaacccaatttatcacctttgcggacgatcactttgtcccg
tggtgggtcacgctggcgcgccataatctcgaaaaagaagcaccggacggcgttgcgacc
gaaatgctggacgaaggtctggtgcgtcaggacctgaccgccctcaatttcgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtatgctgaagaactggccgatggc
aagctacagttaactgtagctatagccgatcctaccgcctggattgcagaaggcagcaaa
ctggataaaacggcgaagattcgtgcgttcaccaactatctgccgggattcaatatcccg
atgctgccacgtgaactgtctgacgatctctgttctctgcgcgcgaacgaagtacgcccg
gttctggcttgccgcatgatcattaccaccgacggtacgattgaagacaacatcaccttc
ttcgctgcgactatcgagtctaaagcgaagttggcctatgacaacgtctccgactggctg
gaaggcaccggcgactggcagcctgaaaacgacgcaattgctgaacaaatccgtctgctg
catcgtatttgtctgagccgtggtgaatggcgtcacaaccacgcgttagtatttaaagat
cgtccggattaccgttttgtcctcggtgaaaaaggcgaagtgctggatattgtggcggaa
ccgcgtcgcatcgctaaccgtatcgtggaagagtcaatgattgcggcaaatatttgtgct
gcacgcgttcttcgcgacacgctgggctttggaatttataacgtccatatgggatttgat
ccggcaaacgctgacgcactggccgcgctactgaaaacccatggtatgcatgtagatgcc
gaagaggtcctgacgctggaaggcttctgtaaactgcgccgcgaactggatgcgcagcct
tccggtttcctcgatagccgtatccgccggttccagtcgtatgctgaaatcagcaccgaa
ccaggtccgcactttgggctgggtctggaagcatatgccacctggacctctcctattcgt
aagtatggcgacatgatcaaccaccgtctgcttaaggccgtcatcaaaggcgaaacgatt
gcccgtccacaggatgatacgaccctgcaaatggccgaacgtcgtcgtctgaaccgcatg
gctgaacgcgatgtgggtgactggttatacgcccgcttcttgagcgacaaagccggcacc
gacgtccgcttcgcggccgagatcattgacgtcagccgcggcggtatgcgagtgcgttta
gtggataatggcgcagtcgcatttattccggccccgttcctgcatgctgttcgtgacgaa
ctggtatgcagtcaggaaagcggcaccgtacaaatcaaaggtgaagtggtttacaaagtc
acggatgtgattgatgtaaccattgccgaagtgcggatggaaacccgcagcgttatcgca
cgtccagccgtgtaa
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